RnoINT0044420 @ rn6
Intron Retention
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82595211-82596774:-
Coord C1 exon
chr1:82596633-82596774
Coord A exon
chr1:82596482-82596632
Coord C2 exon
chr1:82595211-82596481
Length
151 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCT
5' ss Score
4.28
3' ss Seq
GACTCAGTCCTTCCCACCAGGTA
3' ss Score
8.26
Exon sequences
Seq C1 exon
GGCACTGAGGTCTTTCCTCTGATTGGCTCCGTACTGCACGACCCTGCGGTTTTCCGGAACCCGGAAGAGTTCCATCCAAGCCGCTTCCTGGACGACGACGGTCGGATTAGAAAACACGAAGCCTTCCTGCCCTACTCCTTAG
Seq A exon
GTATCTAATGGGCTTTCGGGATAATCAGAGGGTGCTGACTGGCCCGTGGCTCCAATTGGGGAGGCGCTTTCCCGCACCCCTGGGTCTCTGTCGGTTCCCAGGATCCCGTGAGCCCAGATGTGACCATGGCTGACTCAGTCCTTCCCACCAG
Seq C2 exon
GTAAGCGAGTCTGCCTAGGAGAAGGCCTGGCTCGGGCGGAGCTGTGGCTCTTCTTCACTTCCATCTTGCAAGCCTTCTCCCTGGACACCCCGTGCCCGCCGGGTGACTTGAGTCTGAAGCCAGCTGTCCGTGGACTTTTCAACATCCCCCCGGACTTCCAGCTGCAGGTCTGGCCCACTGGCGATCAGTCCAGATGAAGGAAGGAATTTGGAAGGTGGGAGCCACCTGGGACGACACAGTGTGTGAAGCAGGAGTCTCGGGAGCTACCCCATACCACACACCATGCACCAAGGTAGCTGTGAAGACCAGGGGGCCACATCCCCAGGACATAACCGCACGGCAACCGACGCGTATGCTTTTTTGGAGAGGGCTGTCTGAAACGGGATCTTGCTATGGGACACACGCGGATCTCAAAACTTGTGATCCTCCTGCCTCAGCGCCCTGGTTGCTGTAATTAAAGGTATGCACCGCCATGAAGAAGAGCTGCATAGGTTTCCAGCCTACATCAATGTAATGTAGACCATCCGGCATCACAAGCATATAGCTAGATACCCACCATCCACCACACAATTGCGTATGCACACAACCTTAATCTAGCCTACACAGACGCGCAAACAACCCAACCGCGTTCAGGACTCTTACTCTCCCTGTCTAACGCTCTCAGCACCACGTTGCTGGGTCCCTGCCATAGAAAACAGCATGCCCCAGCTGGGGTCGTGTCACAGCCAGAACGATGTTCCTGTCTACTCCCATGGAATGACCTCACCACCATCCAGGCATCTCCATCTACGGCCACTAGCCAGAAATCCACACAGCCAAACCTTACACGACAACATCTTGGCTCTTCCAAACGTCTTCCCACTGAGACACACCGTGACGACAAACTATTCCCCCGCCGCCTCCACACCCTTGCCCCTCAAACATGCTCCTTCCAGCAAATTTCCCCAATATAACTGTTTCCTGGTCTGTAACTGCGCTCACAGACCTTGTACAGACAGGGACCACAGACCCAGAGGAAAAAATTCCCAGTCGTGTTTTACATAATTGCATTATCAGGGGCCTGCTCTCAAACACATTCTGATCTCAGGCTGCCTACAAGTCCTCATGGGAGTGCTGGAAATGTACCCCTCCCCTGGAAGGACTAACTGGTCAAACAGGGATGGAGCAGGGGAGTGCTGTTGGATGTTTCCAGCCCTCCTTATCAGGACAGAAGCCATATCTGACCTCTTTGTGTCCCCATTTTGCAATAAAAGTTTGTCTCTGGCCCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743:ENSRNOT00000028177:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTGCCCTACTCCTTA
R:
GGCTCCCACCTTCCAAATTCC
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]