MmuINT0045118 @ mm10
Intron Retention
Gene
ENSMUSG00000078787 | Cyp2t4
Description
cytochrome P450, family 2, subfamily t, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2686296]
Coordinates
chr7:27157218-27157612:+
Coord C1 exon
chr7:27157218-27157394
Coord A exon
chr7:27157395-27157470
Coord C2 exon
chr7:27157471-27157612
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GCACCTCTGTCCATTCCCAGGAA
3' ss Score
8.73
Exon sequences
Seq C1 exon
ATATATAATATGTTCCCATCCTTCATGGACTGGATCCCTGGGCCCCACAACCGAATATTTAAAAACTTCCAAGAGCTCCGACTCTTCATCTCTGAGCAAATTCAGTGGCACTGGCAGTCACGACAGACTGGGGAACCCCGTGACTTCATTGATTGTTTCCTCGACCAAATGGATAAG
Seq A exon
GTACCAGTCCCTGCTACCCTTAACCATACCCACCCTGCCAAGCAGCAGGCATTAGAGCACCTCTGTCCATTCCCAG
Seq C2 exon
GAACAGCAGGACCTGGAAAGCCATTTCCAGGATGAGACACTGGTGATGACTACTCACGATCTTTTCTTTGGTGGCACTGAAACCACAAGCACTACTCTACGTTATGGGCTCCTCATTATGCTCAAGTACCCTGAGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078787:ENSMUST00000108385:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGTGGCACTGGCAGTC
R:
AGTGCTTGTGGTTTCAGTGCC
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types