DreINT0054249 @ danRer10
Intron Retention
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12672486-12672909:+
Coord C1 exon
chr3:12672486-12672665
Coord A exon
chr3:12672666-12672767
Coord C2 exon
chr3:12672768-12672909
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TTTTGGCTATCACCATGCAGGAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATCTACAACATGTTCCCTTGGCTTCGTCCCATTGTGGCGAATCGGAATCAAATTGTGAAGAATCTCAGAGATACCTTTAAACAAAATGAGGAATTAATAAATGGTGTAATGAAGACTTTGGACCCTTTTAACCCCAGAGGAATTGTTGACAGTTTCCTCATACGACAGCAGAAGGATGAG
Seq A exon
GTACTGTTTCATCATTTTTATTAATTACTGTGCACAAATAATCACACTGTTTTTGCACATTTATTGTTCTGATGTCATCGTGTTTTGGCTATCACCATGCAG
Seq C2 exon
GAATCTGGCAAAACAGACTCACTGTACAATTCAAACAATTTATATTGTACTGTTAACAACCTGTTCGGGGCTGGTACCGATACTACAGTCACAACATTACGTTGGGGTCTTCTGCTAATGGCCAAATACCCTGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995:ENSDART00000170788:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.9=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTCCCTTGGCTTCGTC
R:
GCCCCGAACAGGTTGTTAACA
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]