MmuINT0045333 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115243563-115243983:+
Coord C1 exon
chr4:115243563-115243753
Coord A exon
chr4:115243754-115243849
Coord C2 exon
chr4:115243850-115243983
Length
96 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AAGGATGGACTTTATTTCAGGGA
3' ss Score
4.1
Exon sequences
Seq C1 exon
ATGGAGAATGAGGACAGCATGTCTGACAAGGACCTTCGTGCTGAGGTGGACACATTCATGATCGAGGGCCATGACACCACAGCCAGTGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGAGCACCAACAGAGATGCAGAGAGGAAGTTCAGAGTCTACTGGGGGATGGATCCTCTATCACCTG
Seq A exon
GTAAGAGTTCAAGAAGTAGAAATGCCCTTATTCTTTGGGTTGGGAGGAGCCCCTGGTCTTCAGTCCACCTGACCTTAAGGATGGACTTTATTTCAG
Seq C2 exon
GGATCACCTAGACCAGATTCCCTATACCACAATGTGCATCAAGGAGGCCCTAAGGCTCTACCCACCTGTCCCAAGCATTGGCAGAGAACTCAGTACATCTGTCACCTTTCCTGATGGATGTTCTTTACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(14.5=95.5)
A:
NA
C2:
PF0006717=p450=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGAGTCTCCTGGATCT
R:
CAGGTGGGTAGAGCCTTAGGG
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: