MmuINT0045334 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115243850-115247369:+
Coord C1 exon
chr4:115243850-115243983
Coord A exon
chr4:115243984-115247304
Coord C2 exon
chr4:115247305-115247369
Length
3321 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TATTCCTATCTGCCCCACAGGTG
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGATCACCTAGACCAGATTCCCTATACCACAATGTGCATCAAGGAGGCCCTAAGGCTCTACCCACCTGTCCCAAGCATTGGCAGAGAACTCAGTACATCTGTCACCTTTCCTGATGGATGTTCTTTACCTAAAG
Seq A exon
GTATGAATTTCCCAGGCCCTTCCTTGCAGAGATAATGGATGGTCAATAGTCTATGTCCTTCACCAGTTCTGAATCACTGAGTTCCAGTTTCCTTTTCAGTGAATAAATGCTTCCTACTTATAAAGTACAATAATAAGCTTCAATGACCTCCTCTACACTTAAATGATCTCCAGTTCTGCTGCTTTGAATGAATAACATTGCAAGCATCTCTTCTTTTATCAGCAAACATTAGTTCTTGATTTGAATCTATGGTCTCACCATGGTGCATCCATTCTAATTTGAGAACAGTGACATTATTCAATTTTTATACTCAGACTCAATTCCAGATGCCAACACCATATAGTTCAAGGCTACACTTGTTCTTCAGATGTCCTCACTGTCACATGTGGGTTTTCATGTTGGACTTGGAAACATAGGCATATGTTTGTACATACAAGTGGGAACCAGAGGATCAACGTTAGTTTTCATTCCACAGATAATGTCCAGGAGTCTAGCACTGGTCTGGAAGTCACTTATTAGGCTAGGCTGGCCAGTGAGTGGAAGGAACCTGCCTGTCCCCACCTCACCAGCATTGAGATAGCAAGCATGTGCCACCACACACAGCTTTTTTTTTTTATTGGATATTTTCTTTATTCACATTTCAAATGTTATCCCATTTTTTAGTTTACCCTCCGAAAATCCCCTAGCCCTTTCTTCTCCGCCTGCTCCCCAACCCACGCACACCCATTCCTGGTTCTGGCATTCCCCTGTACTGGGGCATAGAGCCTTCACAGGACCTAGGGCCTCTCCTCCCATTGATGACTGACTAGGCCATCCTCTGCTACATATATAGCTAGAGATACAAGTTGCACCATGTATTTTCTTTGATTGGTGTTATAGTTCCAAGGAGCTCTGGGGGGTACTGGTTAGTTCATATTGATGTTCCTCCTGTGAGGCTTCAGTCCCTTTCAGCTCCCTGGGTAATTCTCTGGCTCCTTTATTGGGTACTTTGTTCTCCGTCCAATGAATGACTGTGAGAATCCACTTCTGTATTTGCCTGGCACTGGCAGAGCCTCGCAGGAGACAGCTATATCAGGCTCCTCTCAGGAGGCTCTTGTTGGCATCTGCCTAATGACTGGGTTTGGTGGTTGTTTATGGGATGGATCTCCAACTGGGACAGTCTCTGGATGGTAGTTCCTTCAGGATCTGCTCTGAACTTTTTCTCTCTAACTCCTTCCATGGGTATTTTGTTCCCCATTCTAAGAAAGAATGAAGTGTATCCACACTTTGGTATCCCTTCTTCCTGAGTTTCATGCACACACAGCTTTTTTTATAAGGGTTCTGCAGATCGAGCTTAGGTCTTTCTCTCAATCACCAATAGTCACTTATTTTTATCATCCTCAACATTTGATATAATATGTAGACTTTTTGTTTTATAAAGAACTACTATTTATATATAGATGAGCAAATACAATGTGACTCTAGACTCTTGCCGAGTTCAAATTATTGGTCACTCTCTATAACCTGGTGGTTTGATGTCATCAAACACAGAAAATAACATGATGCCCTACTAATAGCCCTAATTCTCTACCCAAATAGTGAATACAGGTTTTTTTAAGCTTATTTCACTAATAGTTTTGCATTATACATGCATAGAACACACACACACCAAGGGGGAGAGAGTTTTTCAAATAACAAAGAGCAAATAAGACAAATTTAAACAAAATAGAATGAGTTTTTTTTCTTGCAGAATTCCTTGGAATCTTCAATTTGTCTATCTGGATGTCTGTGAAGGAAAGAATGAGTTTCCTCACTTCCTGATGACTGACTTCTTTGTCTCTAGCATATCATAGAAGTAGAACCCCCACAGCTGTTTTCTGCTGACCTTTTGCTGTGGCTTGGTATTTGTCCCCTGCCAAATTCATACAGCTATGCAATTCCCAGAGTCACGAGTTAATGGAGTTGGGAGGGTGAAAGTTTTTGTTAATTTATGTTGATCTTGATGGTGCTGTAAATTGTACAAGAGGATTCTTGTTTGCTAAGCATGTGCCCTAGGACTGACCAACTTATCCCAAGACAAGATGGATAAACTTAGATTGACTATGTTTAGAGGTAGATCCACAAGGTAGTGGATCGATTAGATTAGGGTTGGTCTCACATTGTTCTATATAGTGGCTTTAGAAAGAAAAAGAAAGAGACCATGAAGAGATATACACCTGTCCTCACCATGATAGGATGAAACCAAGGGGAGGGAACTGTTTGAAATTTCAACTCCAAATCTGTGAGCTAAATAAGCTCCTTTTCATTACAAAGTTGTGTGTGTGTGTAAAACTTTTTCTCAAAGAAACCTGTGAATATGTTATTTTTACTTTATCTCTCAAATACTATTCACTGGGATGTACAGGATAAAGAACCAGACAGGGGCTAGGAAGATGTGTTTCTTTTATGAGACAAAGCAAGTGAAAGAGTTCAATGAATCCTATGTGAGTCATATGTGATTCCTTCTCTGAGAAGCACTAGGGTTGACAGCAAAGATGAACTGATCAGCAGATACAAGACCCCTGCAATGTCAGGAAAGTAACCCTTGTCTCAGCTCATTATGTCAAAACCCTATGACTGTCACATCCTGCTTTGGTGATATGTAACCCCTCTCTGAAACTTCAGTACCTATCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAAAGCAACATTTAACTGGGGCTAGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCATCCAGGCTGTCATGGCACAGGAAGAGCTGAGAGTACTACATCTTCATCCAAAGGCTGCTAGTGGAAGACTGACTTCCAGGCAACTGGGGTGAGAGTATTAATCCCACACCCACAGTGACACATCTACTCAAACCAATTCACACCTATTCCAACAAGGCCACACTTCCGAATGGTGCCACTCCCTGGTCCAAGAATATACAAACCATCACAGTACCTTACCTGAAAAAACAGAATAAACCAACTCAATGTCAGGACTTAATATACATTTTTAGTGGAAATCCTTCATCAAATTTAAGTTCTAATGTTATTTATTCCCAAAACTCAGGTTCATCTTTCTCGATTTTCTCTCTTACACTCCATTTTTTATACTCCTCACTTGTGTCTCAAGTTCTTTCCCAATTCATGCACATGTGCAGAAAGTGATGTTCTATAGCACCCAAGTATCTTGTGCAGGCATATCATCCCTTGCTGTCTCAGGAACCAAGGAGTTACCCCTGGGTGTAACCCATCTTCTCTCATATTCCTATCTGCCCCACAG
Seq C2 exon
GTGTCCAGGTCACACTCTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.3=100)
A:
NA
C2:
PF0006717=p450=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: