MmuINT0045373 @ mm9
Intron Retention
Gene
ENSMUSG00000024292 | Cyp4f14
Description
cytochrome P450, family 4, subfamily f, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1927669]
Coordinates
chr17:33048600-33051627:-
Coord C1 exon
chr17:33051483-33051627
Coord A exon
chr17:33048654-33051482
Coord C2 exon
chr17:33048600-33048653
Length
2829 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GATGTCCTTGTTCATGGCAGCCG
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTAACTCCTACAGAGCAGGGCTTGAAGGAATTGACTCGTTTGGTGGGTACCTACCCCCAAGGTTTTTTGATGTGGATTGGACCAATGGTCCCTGTTATTACTCTATGCCATTCTGACATCGTCCGATCTATCCTCAATGCCTCAG
Seq A exon
GTACCCATGGAAACTGTTGGTGGTGGGGATTAGAGGATTTTCAGTCCCTTCTATGTTTCTCTGACAGTGTTCCAGTCCCTCCTTTCTCCCACCCCCCCCTCCTCCTCCTCCTCCTCTTCTTCCTCTCTCTTCCTCCTCCCCCTCCCCTCCTCCTTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCTCTCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCCCCACAGTTTCACCAGCTCCTACATGACTCTCTCTACTATTACTGGCTATACCACTACTACCTCTTAGTATTCTGGACATTCTGCATCCCCAGATGTCTTCAAGCCAAGGTCCTCTCCTAGAGGAAGCCAATACTTGAGGTAGAAGTTGATAGGGGCAGGAACATCCCTAACCCGGTGTGGTCAGGACCCTGACAGTTGGGTGAAGGGTGTGGTCTCTGCTAGGATGTATGCAGAGGCTTCCTAGAGGAACTGTTGCTTAAGTCATGTCTTTAGGTTTGAGTAGGAATGTTAGAATCAGGGCCAGGTGGCCCAGTGGGCATCAGAAACATCTAATGCTCAGACCTAGAACCAGAACAATAAACATTCCTACGCTCAGAGCAAGGAGGGGACTTGTGGCTGTTAGAGAATCTGCTCTGTTATTTCTATTATTTCACTCAACCCCGAGTTCATCTTTCCACCCTGTCCAGTTGGTTGATCATCTTATGCTGATTGGTGTCTTGTCAGGGCCCAGAAATCTTCCCCATCACAGCCTAGCTTCCTACCTTTGCATTCTTATCTTCCCACCTGGTGATAGACCAGGTTAAGGGAAAGAGATGAATCACCACAACTTTGTCATTTGCCAGGCATGGGTCTGACACTTCAGCTGCCAAATTATTTCAAGTGTGCCCTGGGACTTGAAGACCTGAATCAATCACCCCACTTTACTTTTTAAAATATTTGTGAGAGGGCATATTTGTGTGAGTGCAGGCATGCATATGCTGTAGCATGCACGTGGAGGTCAGAGTGCACTTTGATCCTTGTCTTCCGCATTGTTTGAGGCAGGGTCCCTCATGGTTTGCTTCTGTAGATGCACGCTAGCTGTATCTTAAGCATTCAGGGCAGAGAACCCTCCTGTGTCTGGCTCCTATCTTATCTGGAGTTATACAAATGTGCTGCCACACCTGGTTTGGAGGATTCAGCGGGCTTATGCAGCAAGTGCTTATATCCACTGAGTATCTCCCCAGTCCAGACCATGCCAATTTCATGAAGCCCGTGCTTTTTACTCCAGGTGGACACTGCACTTGCTCCAGCTTGCCCACTACTGAGGTCTCTGACGCCTCCAGCTGATAATGCAATGTGAATCAGACAGGCAGGCTGGGCTGTGGCAGTAACAACCCTATATCTTTCTCATGTGGACATCCTCTGTCTCATATCTGACCATGTTGCTTGTGTTGTGAGCATAACTGTATGATGCCATCTGTATAGTCACAGCTCTTGCAGGTTCACATTTACATTTCCATCTCCTCTTTTGCATTTATATTTGTCTCACCTGGGATTGCATGAAGATGGTCCTATCTGCTCTTAGCTGCAGACCTGAATCTTCGATGCATGGCAGGTGCTGTATGAGGGGCCATGAAGATGATCTTCTTATCTTGCTTTTCACAGCTGGGCTTTCTTTGGGGGCTGTCTGAGATCAAGGACCTGAGAAATGATGGATCCCTTATCAGGGTCATATCTAAGGCAAGACTGTAAAAACATCCAGGTGGGACCAGTGGGTCACAGCTAGGCCACATTCAGTATATTAAAGGAACTTTTGGTTTTTTGGAGACGTTGTTTTGCTACTCAGTCAAAGCTAGCCCCAAACTCAGAATTTTTTGCTTTAATCTCTGAAATATTGGAAATTACAAGAGCCACCATGCTGTACTTTTCTGTTGCTGTGATAAAGCACCATGACAAAGGGAACTTATAGATTTTTGGATTGTGGTTTCAGAGAGACAGTCCATAATAGTGACAGATCCTCGTGTCAAGAGTAGGAAGCTGAGAGATCACAAATCAGCCATAAACACAAAGCAGGAAGAGCAACTGAAAAGCGGGGAGAGTCCGTAAACTATCAAAACCTGCTCCGAGTGAGGTGCTTTCTTCAGCAAAGCAACACCTACTAAACCTCCCTAAACGGTGTCACCAGCTGGAGAACAAATATTCAAACACATCCGCCTATGGGAGACACTCATTCAAACCACTGCACATGACAATTCTTAAATCCTGTGAGAGGCTTGTCTGAGGTTTACATGAGATCTGTCAGATAATCTGGTCCATGTTGCAGCACGAGGCATCCTGTCAGGGCAGTTATTTGTGCTAAGGCCACACTATGCCATGTTAACCCTTACGGTTCATGTGATGTGCCCCATATCGATTGGTTCAGGAGATGCCAGGTACCTAAGGTGCCTAGATGATAGGGACATAGGTTTCAAACTGTCACAGAGTTGTGATGGAATCAGGCATGGCATACATGTTAGACTATGTACAAGCCATGTATAGTGGCACTGCAGCAAAATAGGGTGTATTGAGCAGTGACTTGCCTTTCCTGCTGACACTACTGTTGCCCAGTTCTGTCTTTTCTCACTTTCAACTTCATTTTGCCTCCTCTATCCTTGGTTCTTGGCATGTGAACTTTGGAAGGGAAATGCAGACTTCCGGGAGGGGTCCCCACCCACCTCCCCAGTCTGTCCTCACCCACACCATGACCCCTGATGTCCTTGTTCATGGCAG
Seq C2 exon
CCGCTGTTGCACTCAAGGATGTGATATTCTACAGCATCCTAAAGCCTTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024292-Cyp4f14:NM_022434:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: