MmuINT0045411 @ mm10
Intron Retention
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32520363-32520630:+
Coord C1 exon
chr17:32520363-32520416
Coord A exon
chr17:32520417-32520502
Coord C2 exon
chr17:32520503-32520630
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGCCATCACTGTCCTCCCAGGGG
3' ss Score
8.43
Exon sequences
Seq C1 exon
CTGCGGTGGCCCCTAAGGAAATGATTTTCTATGGCTTCCTGAAGCCCTGGCTGG
Seq A exon
GTGAGTACTGAGGTCCAGGTCAGGAGATACCCTTCTGGGCCAGGGGAAGGTGCTACCCTTACTCTTTGCCATCACTGTCCTCCCAG
Seq C2 exon
GGGATGGACTGTTGGTGAGTGCTGGTGAGAAATGGAGCCGCCACCGCCACCTGCTGACACCTGCATTCCACTTTGACATCCTGAAGCCCTATATGAAAAATTTTAATAAGAGTGTGAACATCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586:ENSMUST00000165999:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGCCCCTAAGGAAATGA
R:
TGCATGATGTTCACACTCTTATTAA
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types