RnoINT0044559 @ rn6
Intron Retention
Gene
ENSRNOG00000062306 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:RGD Symbol;Acc:1561655]
Coordinates
chr7:14537789-14538058:+
Coord C1 exon
chr7:14537789-14537842
Coord A exon
chr7:14537843-14537930
Coord C2 exon
chr7:14537931-14538058
Length
88 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGCCATCCCTGCCCTCCCAGGGG
3' ss Score
8.91
Exon sequences
Seq C1 exon
CTGCGGTGGCTCCTAAGGAAATGATTTTCTATGGCTTCCTGAAGCCCTGGCTGG
Seq A exon
GTGAGTACCTCAAGGTCAGAGTCAAGAGATACCCTTTTGGGCCTGGGGAAGGTGCCACCCTTGCCCACTGCCATCCCTGCCCTCCCAG
Seq C2 exon
GGGATGGGCTGTTGGTGAGTGCTGGTGAGAAATGGAGCCGCCAACGTCGCCTGCTGACACCTGCGTTCCACTTTGACATCCTGAAGCCCTATGTGAAAAACTTTAACAAGAGTGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062306:ENSRNOT00000060284:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGCTCCTAAGGAAATG
R:
GTGCATGATGTTCACACTCTTGT
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]