MmuINT0045417 @ mm10
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:72009044-72009626:-
Coord C1 exon
chr8:72009579-72009626
Coord A exon
chr8:72009243-72009578
Coord C2 exon
chr8:72009044-72009242
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TGTGTGCATTTGCCCTGCAGGAT
3' ss Score
10.71
Exon sequences
Seq C1 exon
AGAGAAGGGGAGAGACAGACCTGGGAAACACAGTGCTCCTGAGAGAAG
Seq A exon
GTACCAGACTAGGGCCATTGGGGCTGAGAGGTCCTAGGCTGGGGCAGGACAGGAAGTCAGAAGCAGATGTTGATTTCTGGCTAATAGTCCATGGTTTAGACTCTAATCAACCCCTTTCCTCCATCCTCTTTCATTTCCTCTCTCTCTATCTCCTTCTCTTCCCCTTTCTTCCCCTCTTCTCCCCTCCTTGCCTCCTCCCATAGATTGCCCTGGGTCTCCCTTCCTCCCCAGGCATTATCCCCAACTCTCTAATTCCCTATCCCTGTCCTTTGCCCTAGACCACACTGTCCCTCTTCCATGCCCCAGGATTTCATCCTGTGTGCATTTGCCCTGCAG
Seq C2 exon
GATGTCACAGCTGAGCATGTCCTGGATGGGCCTGGGCCACACAGCAGCCTCTCCATGGCTGTTGCTGTTGCTGGCTGGGGCCTCCTGCCTTCTGGCTTACATCCTTACACCGATTTATGGTGTTTTTGAGAACTCTCTTCGCCTCCGCTGTTTCCCACAGCCTCCCAAACGAAACTGGATCTTGGGACACCTAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484:ENSMUST00000003574:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGGGAGAGACAGACC
R:
AGGCCTAGGTGTCCCAAGATC
Band lengths:
246-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types