MmuINT0045417 @ mm9
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:74532943-74533525:-
Coord C1 exon
chr8:74533478-74533525
Coord A exon
chr8:74533142-74533477
Coord C2 exon
chr8:74532943-74533141
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TGTGTGCATTTGCCCTGCAGGAT
3' ss Score
10.71
Exon sequences
Seq C1 exon
AGAGAAGGGGAGAGACAGACCTGGGAAACACAGTGCTCCTGAGAGAAG
Seq A exon
GTACCAGACTAGGGCCATTGGGGCTGAGAGGTCCTAGGCTGGGGCAGGACAGGAAGTCAGAAGCAGATGTTGATTTCTGGCTAATAGTCCATGGTTTAGACTCTAATCAACCCCTTTCCTCCATCCTCTTTCATTTCCTCTCTCTCTATCTCCTTCTCTTCCCCTTTCTTCCCCTCTTCTCCCCTCCTTGCCTCCTCCCATAGATTGCCCTGGGTCTCCCTTCCTCCCCAGGCATTATCCCCAACTCTCTAATTCCCTATCCCTGTCCTTTGCCCTAGACCACACTGTCCCTCTTCCATGCCCCAGGATTTCATCCTGTGTGCATTTGCCCTGCAG
Seq C2 exon
GATGTCACAGCTGAGCATGTCCTGGATGGGCCTGGGCCACACAGCAGCCTCTCCATGGCTGTTGCTGTTGCTGGCTGGGGCCTCCTGCCTTCTGGCTTACATCCTTACACCGATTTATGGTGTTTTTGAGAACTCTCTTCGCCTCCGCTGTTTCCCACAGCCTCCCAAACGAAACTGGATCTTGGGACACCTAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484-Cyp4f18:NM_024444:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGGGAGAGACAGACC
R:
AGGCCTAGGTGTCCCAAGATC
Band lengths:
246-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: