MmuINT0050659 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119352276-119359032:-
Coord C1 exon
chr12:119358946-119359032
Coord A exon
chr12:119352435-119358945
Coord C2 exon
chr12:119352276-119352434
Length
6511 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CAGGTGTGCTTTCTCCTCAGGCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GAAAAGCAAGCAGAATTCAGAGAGAGATTCAGAAGCTATGCTCCTCTTGGATTTAAGGCAGAGAATCCATACGCAGTGCTTGATAAG
Seq A exon
GTAATTCGTTCTCACCTGTATCATGTGTATAACAATGATACATATATAGCCATATTAGCCATATTAGAAAGATCTAAAGTTTTAAATGGTGTTTCCTCTGAACACCACCATAATTGCACAAGTAAAAATGACACAGAGACAGTGTGAACTCCTACCATATGTCAAGAATGATATCAAGCCAGCCTTGGTGGCACAGGCCTAGAATCCTGGCTGCTTAAGGGACTGAGGCAGGATCACAAAATCCAAGGCTTGCCTATCTCATGGAAGAGTGAGTTTAAGGCTGATCTGAGTAACATGGTTATATCCTATCTCAAAACAAAAAGAGAGGACGTGGATAGATCTGTGTAGAGGTGCCTAGTTTCTTGGGGAGGCCTTGAGTTCAATTTCTGCGCGTGTGCAAATGGATGGGGAAACACACATACACATTTACACACTTACATACACACTCACATACATACACTCACATACATACACTCACACACACATACACACACTCACATACACACACTCACATACACACTCACCCACACTCACATTCACATACATACTCACCCACACTTGCACACACTCACACTCACTTGCACACACTCGCACACACACTCACATACTCTCACACACACACTCACTCACACACACTCTCACACTCACACCCACACATCCACACACCCATACTCACACACACACTCACACTCATACTCACACACTCACTCGCACACACACTCACACACTCACATACACACTCACACCCACCCACACACACACTCACTCACTCACACAAACTCGCACACACTCACACACTCACACTCACACACACTCGCACACCCACACACTCACACACACTCACACTCATAGACACTCACACATACACACTCACACACACTCGCACACATACCCACACACTCACACACACACACACACACACACACACACTCACTCTCACTCCCACACACACTCCCACACACTCACACACATCCATACACATGCATCCACACACTCACACTCACACATACTCATACACACTCACATACACACTCACACACTCATACTCACTCACACACACTCACACACACACACACTCACTCACACACACTCACACACACATACACACGCAGTAAAGAGGAGATTAAACTAAGAACTTTTAAAAGCATATTGCATTTTAATTACCACTGTAGACCTATGAGATAGCTTCAGTTTTTCTCACTTTAGATGAAGAAAATCAGCATATAGTTTTCTGATTTCACTTCATAAATTTCAGAAATGGGATTATAGTTTTGGCTATCTAAATTGTTTTAAGGAAATGATCAATTCTAACAATGATGCTGCTTCCAAAGTGACCATTTTCTCCTATGTTTTCTAGTATAGAGATTGGGGCAGGGCCTTTGCACACTACTCAGTAAATGCTCAACCAGTGATCTCCTCCACCTCCAGACCCCACTGAGTATAGTTGTGACCACAGGAAAGCTCATAAGCCGCGTGTAAACACTGCTGAGTCATCCAATGTTTGTTTGTTTTTTTCCTAAGTTACTTTATTATAAGAATTAACTCAACAGTGGGAGGAGAGGCCCTTAGTATTGCGAAGATCATATGCCCCAGTGCAGGGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGGGAGCAGGGCAGGGGGGGGGAGGGTATATGGGGTTTTGGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAAGAATTAACTCAAATCCACATATGATTTATAGGAGACTTGGTTCTTTGTGTTAGAAAAATACTTCAGGATCTTAACCTTGCAGTCCAAATGGTACAAAAATGACCCCCTGAGGGTGAGAATGTTTCTTTTTTTTCCATTTTTTAAAAATATTTTTATTACATATTTTCCTCAATTATATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTGGCCCTGGCGTCCCCCTGTACTGGGGCATATACAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACATGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGGTGGATCCCTGGGTATGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTGGTGAGAATGTTTCTATTCAGGTGCTGTTATCCTTCTGAATTCTCCTTTGGGCTCTATCTTCATGCTTGGCATAGTATTTTCCCTTGGAATGGTGTCCAAATTGACATAACTCTTACCCTATTTTCCAAATCTTTAAATTGGAACTTAATTGCTTTTAACCCTGTTCAGAAAACCCTGCTCTGTAGTCTTCTCTTCCATTTGGCTGAAGAAAGTTAGTTTATGTTCATTGAAAAGGAGTGAGTTAGCATATGTTAATAAAGGATTGTTAAAAAGACTATATCTAAACTCCAGGTGGGCTGAACAGATTGTGGATGGGAAATGTTTTTTTTTTTTTTAACTTGACTCACCAATATGCTGTCTGCAAACATTTATGACAGATATGTACTGAATCTCGCCACTTCCACACATGCTATAGCAGCTTATAGTTGCACGTTCAAAGTGAGAGGGCTCATCCTCTGCCTTTCAGGACTCTGGCACTTCAAACAGGATGAAGCTGAATTACCTCCTTCTTGTCATTCTCTGGGTGGGCTTGTTTGGCTTGTAAATCTAGTACTTCAAGAATCAGAGGCATGGTTATTCTTGTTCTGCAGTGACACTGGATGATTATACTCCAGTCATTTCACCTCACAAGTGAAAGCCACTGACCTTCCAGAAACAAGGCAGGTGATGGACTATGATGGCGCCCTTTATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCATTCCTTCTTTCTACTCTTTCTTTCTGTGTAGGATTCCATAGTAAATTGCTGGGGTTTGTTCAGAGCTAAAGATGGGGTGCATATCTTGTCCGAGCTAGTATCTCGCCGGCAAGAATTCACTCGGACAACCGGATCCTTCTATGGCAAAGCTTTTATTGCTTCAACATAAGGAAGACCCCAAACCCGGAAAATGGCGCTGCTTATATAGCCCGTAGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTATGCCCCATATGGGCAGTGACTGGGCGTGAATTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGTGCCATCTTATAATGGCGATTGCTCACGGCACGGCTCTCCACATGCATAAAATAGGGTGATTATTCAAGATAAAAGGCTGTTGACTTTGGAGAACATGCAGACTGTGAAGAGTCCTCTTTGTCTAAACGATGTTGGGTGCATCACAGATGTACAGTTATACATTTGGTGCAGAAGTGAGAGAAATCACTTACCAGCAGGATAGAATATTTGAAAGGAGGTTGAAAGTAGAGGCAGATGCCAAAGCTATGCTGCTGTAGGGACTCATGAACACACCGGAACATACTAGAAGCCTACAGTTTTGGGATGGACACTTTTGCCACAAGCAGATGCTTATATCAGAACAGATTATCACAGGCTCAATGAGATATGTCTGAGCAAGTGCATTCAAAGTCTACAACCTGTATGGGGAGCCTCTGAGGTTCCTGTTCACCTTTGCTAAGCTTCAGAGAAAGATGAAGAAAAAGTAAAGGGGTCCTCTGTGAATCTATAATATGAACCTATGGTCAGAAGCACCCGAGGTTCTCTTTATTCTGCCCAGGGATTAAGGAATTTCCAAGGCCAGGAAACAGAAGTGGCCATATTAGCTCTTTTTAGAACCCAGTAGAAGACAATTCAAATCTCTGGAAAACATGCTTCCAATCTTGATCTAGTATCCTCATGGGAGCAACAAACAAAGCTAGTCAGATGCTAGGACACCAGTGAGCAGTAAACAATGAATAACCCTCATACCTGGGGGTCAGCAGAAGCCCCAGATGCAGAACCATGTAAAGATCTTCAGATACTAGAAAAAAAATGAGCACACTGAAAAAGAAATGAGCAGCATTCTGTTTGGAGTTTATCAAAAATGTTCAGTTGAATCTGGAAAAGTACCAGTTACTTACAGAAATGGAAATTACAGTTGCCAAAAACATACAACTCAATAGATAGGAGAATGAGTTAGTTACATTTGGAAAGGAAAAAAAAGGTAAAATGCATGTTACATTGGAAGAAATGACTCAGGATATAGCAAATAGATGTAAGGAAATTAGGGAATGGAGAAGAAATATAGGGGAAGAAGTTCTAATGTACCTAACTCCTATGTCCTAGAAAACAATAAACAAAATGATAGATAGATCAAGGCTTCTCAAGAACTAGATTGAGCATGAATCCATGGCTTCAAGAAGCTGAGTGAATCCTAATCTGGATAAGTGAAAGTCTGTCTAACTTTATCAAAGTGAACCAAAGAATACCAAAGGTGACCAGATAAAACCAGACACAATTAGTTAGTAGTGTTGAGAAGGCAAGAAGATCTCAGCAACAACAGAAACCAGAGGTCTCTGGCAACACCTTCCAAATCCTGAGTAGTAATAAAATTAAAGCATGCTGGATAGTGTAGCATTGGGATGAACACAGTGCACACAGAGCCTTTGCCTCCAGAAAAGGGGACAGCAAAGTGAAATGTCACTTTAGGACAGAGCCACATGCCACCAGACCTCAGGAGGAGTGATCAGAGTGACAACTGTACCGCCAATGGTCTGGGACCAAGTAAAGAAAGAACCAGAACCTGTGGCCACAGAGCATATTAACACAGAACTTGAAAGCTTGGGCATAAAATGCATACCTTTCCCATAAAGATTGTTTCTAGAAATACTAAGTCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGACTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCATTAAATCTTGCTAGTATATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCTAGATTTGGCAATCACTAGAGGGCCAAAAACGGGGAGTGGGGTGGGTAGGTATGGGGGAAACAAACTAGTTTCTACTAGATGCAAAATATTAGTTTTTCTATGTGACAGGATAGTAGGTGAACCTTGGCAAAGGCGATTATTAGGTACAATTCAAACACAGGTATGTGTGAATGAATTTACTCTGTATGTTCTTGGGCATGTGCATTCTTGAGTGTGTCCTGTACTATTGATCATTGGCAGGGTCATTTTAAAGTTGGAGAGGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCAGTGTCTTACTCTGTGGTCCAGGCTGGCTTTGAACTTTCAGTGATCCACCTGCTTCAGCCTCCTGCAAGCTGGGATCATAAGCATGATGCACTACTCACAAGTGGAGGATTTTTTCTCTTATCTTTCCCTTTTTCTTTTTCCTTTCTTTCTCTTTTTCTTTCTTTCTTCTGGTGGTGGTTTTGTTTTGTTAAACTAAGAAATCAAAGAGAAGAGGAAGTTAGAATGGGGGGAGGACTTGCATGAGGGTATACTGGGAGGAGAAGAAGGGCTGATACTGGTTTGTAAAATAGATAAATTACACACACACACACACACACACACACACACACACACACACACACACACACACAATTCCTGACATGGAACTTCCCTTGTCCTTGAGCAAAGCCCAGCTGCTTAATGAAACTAAGAAGTCAAAAGCCTTCTACACTACAGTTTACCAATAATTACACTGCAGAGTTTTTATTTAAATTTTCTTTTGAGCCTCACAATTTGAATTTTGCAGTAGGAGAACCAGGGGATGCTGACTTCATTGTGCAGGTGTGCTTTCTCCTCAG
Seq C2 exon
GCAAATCAGGAGCTCGAGGCTCTAGAGGAAGAGATGGAGCAGATGCAAAACTCTGCACGTCTTTTTGAGGTGGCTCTTCCGGAGTACAAACAAATGAAGCAGTGCCGACAAGAAATCCGCCTGCTCAAAGGGCTCTGGGATGTCATTATTTATGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083938=DHC_N2=PU(5.6=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: