DreINT0058030 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19546931-19547316:-
Coord C1 exon
chr16:19547230-19547316
Coord A exon
chr16:19547090-19547229
Coord C2 exon
chr16:19546931-19547089
Length
140 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TGATTCTGTGTGTTTGTCAGTGT
3' ss Score
7.87
Exon sequences
Seq C1 exon
AAAAAGCTGTATCAGTTTAGAGGAAAGTTCAGAACAGAAGCTCCTCTTCAGTACAACACAGATAAACCTTATGCTTGTCTGGATAAA
Seq A exon
GTAAAAACTAACTTCTTCTAATTTAAACAATCACACCACATCATACCGCAGTGTTCATTTTCATATATTTCCATACATTGACATTTTGTTAATAATAGTAAGTGCGGTGAGGACATGAGATGATTCTGTGTGTTTGTCAG
Seq C2 exon
TGTCACATGGAGATGCTGGCTTTAGAGGAAGAGAATGCAGATCTCCAGGAGTCCTGTAAGCTGTTTGAAGTCAGCAGTCCTGATACTAAACAGCTCAGGCTCTGTCAGAGAGACAATGCTGTTCTAAAACAGCTCTGGGATCTGCTCCTGTGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083938=DHC_N2=PU(5.6=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTATCAGTTTAGAGGAAAGT
R:
CTGAGCGCACAGGAGCAGAT
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]