MmuINT1008794 @ mm10
Intron Retention
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118098538-118101125:-
Coord C1 exon
chr11:118101039-118101125
Coord A exon
chr11:118098691-118101038
Coord C2 exon
chr11:118098538-118098690
Length
2348 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
CCTCTCCCCTCCCATCCCAGCAA
3' ss Score
7.87
Exon sequences
Seq C1 exon
CTCAAGCAGCACGAATTCAGAGAGAAGTTCCGACGTGATGCCCCCTTCTCCTTCAGTGACCCCGAGCCCTACAAGTCCCTGAATAAG
Seq A exon
GTACTTATGCACCGTGGCGAGGTCCCTGTGGCAGCTCCGGGAACCCCTTTGGAGTGCTGGTCTTTTCTTAAGCCTTTACTCTCGCAAACGGAAAAACCGAATAAATGGGACTGCCCGCAAGGCCAAGCCTGTGCGTGCACGGGACTCGCTCGTGTGCGGGTGCGTGCGGACATCCATGTGGACATGCAGACTCAGGCATCCTCCTCCCTGGCACACAGCCTCCACTGTGCCACACTGTGCTTAGGGAGCTATTCCAGAACAACCACCACCCATGCCCACATGAGCATCCTGCAAGCCTCATGGGCTGCTGTTTCCCTTCAGGCTGGTTTCCTCAGCCTATGAAAAGTTTCCTGTCACCTGGATTTAACTCTCATCCCTCCCTCTCTCCCATCCAACCAGCCACCAGGTTTTGGACGTACACACACACACACACACACATACACACACACATACACACACACACACACACACACACTTTGTTCTCTCTGCCCAAGGGTTAGAGTCAGCGTAGGATGCTCAGGTCCACCCACGGCCATGGCCCCACCATCTTGCCAAGCCAGCGTAGGTCCTCCCAGGGCAGGCGTAGAGGTTCTCAGAGCTCGGGTCAGCTCTGAACTCAACAGACCTCTTGCACTGACCCTGAGGCCAGCCCCCCGGGGACCTCAGGTCACACAGACGTGAACCCCACAAGCTCCTCCTGCAAGTCACCTCACCTCTCTCTACTCTGAACTCCCATTCTTAAAGTCAGGGCTCTCCCTCTCCCTTTCCTCATGGCCATTTCACACCACTCTCCCTGAGCCACAATCTCGACACCACTTTTTCCCCCTCTCCTTTTTTTTTTTTAAGATTTACTTATTATATGTAAGTACAAATCTCACTACGATGGTTTTGAGCCACTATGTGGTTGCTGAGAATTGAACTTAGGACCTTTGGAAGAGCAGTCAGCGCTCTTAACGGCTGAACCTTCTCTCCAGCCCACTTTTTTCTCTCCTTAAAGCAACCCCATGCTGCTTTTTTCTCCTCATTTCTAGTAAGTTAGACATCTGGTATGGAAGCAATGGGTGTTGGGAGATTAACCCAGCAGGGACTGAGGTATGCAAACCCAGCAGGCTGTGGCGGTACACATCAGTTATCTCAGCTCCTGGGATATATAGGCAGGATGGTCAGGTGTTCAAGGGCAGCCTCAGCTTCAGCTTCAACTTTGTAGAAAGTTTTAGGTCATCCTGGCCTACTTGAGACCCAATCTCAAAAACAAACAAATGAATAAAAATCAGCCTAGATATGCCGCAGCCTAGGGAGTGACCTAACTGGGGCTTCCGGGGATGAAGAACAGACCTGTACATAGAAAAGGTGGTGTCGGGTGGACTGTGCACCCTGGTGATGCACAACAGCCCAGAAACTCAATACATTTATTGTATATGCCTGAGTCCTCGACGCAGGTTCATTGTATACAGCCGAATGAGATGGGTTTAAGCTCATCACCATAGAGGGTCTCTGTAGGTGAGCAGTCTAGGCTGTGAACATCCAGGAGCTGGGAGGAGGGAGGACGGAGGAGGGGAGGAGGGAGAGGAGACAAGGGAGGAGGGAGGAGGGGAGGAAGCAGGAGGAAGAGGAGCTGAGGGGAAGAGTTGGGGGGGGGGGAGAAGGGAGAAGTGAAGAGCGAGGGGAGGAGAGATGGGAGGAGGTAGAAGAGGAGGGAGGGGAGGAGGGGACTGTGGTTGGTATTTTCTGCACATATTGTCAACATCCTACATGGACCAGGGGAAGCATGACCTGACCTGAGCCTGACCTGAAGAAAGGCCTTGTCATGCCCCTGGGTCTGAGGCAATGGGGTTCTTGCCATAGCTGTGCCCATAACAACACAAATTCAATTCTTTTTTTGGGGTTTTTTTTTTTTTTTTTTTTTTGGCTTTTCAAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCCGGCTACAAATTCAATTCTTCATCTAATGAGTCTCCTCTTACTTATATCCAGAGTGAGGGGCATCGTGGAGGGCGGCTGCCATCTTGGCTGGAGCATTGGTCTCCGTCAGGCAGGGATCAGGTGGACTGTACTCCCTGGGGGGGGGGGGGCAGCAAGCTGCTGCTAGAGGACAGAGAAGATTTACTGGGGCACGTTGGGGATAAGAGACCAAGAAGGCAGGAATGGGGGCAGGGCAAGGCACTCAGATTTGGGGACACCCAGGCCAAGGCAGCCATTGATGTCCTCTCCCCTCCCATCCCAG
Seq C2 exon
CAACAAAAGAGCATCTCGGCCATGGAGGGCGTGATGGAGGCGCTGTGCAAGTCTGCCAGCCTGTTCGAGGTCACGGTGCCAGACTACAAGCAGCTGAAGGCCTGCCACAGGGAGGTCCGCCTGCTGAAGGAGCTCTGGGACATGATTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987:ENSMUST00000132685:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083938=DHC_N2=PU(5.1=50.0)
Main Inclusion Isoform:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types