HsaINT0049527 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76521091-76522819:-
Coord C1 exon
chr17:76522733-76522819
Coord A exon
chr17:76521244-76522732
Coord C2 exon
chr17:76521091-76521243
Length
1489 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
GGCCCCCTCGCCGCCCCTAGCAA
3' ss Score
6.01
Exon sequences
Seq C1 exon
CTCAAGCAACATGAGTTCAGGGAGAGGTTCAGGCGCGAGGCCCCGTTCTCCTTCAGCGACCCCAACCCCTACAAGTCCCTGAATAAG
Seq A exon
GTATTTTTGCTCAAGGGTGAGATCAGGGGGTAAGTCTGGGAACCCCACTGCTTTCTTTTCTCAAGTAGTTATCCTTTCAAGTCCAGAAACGTGGTCTCCGCCGGACTGACCTTGGGGCCGTGCACGAGTGCTCTTATGTGTATGCATGCACATACGTGTGCGAGCACATGCATGGGTGTGTACGTGAACATGCAAACCGAGCAGCCCCCCAGACCACATGGTGTCCCCTCTGTGTCTCGCAGCTCAGAGCATGGCTCCAGGCCCACGGCTCAGGCCCCTTAACACCCTGTGTGACCCATAGTCCCTTAGCCTGACTCCGCCCCCTAATCTCCACTCTGTTCACATTCAGCAGCTTCCTGTCCCCTGGGCTTAATACTCACCTGCCATCTCTCCCTGCCTCCTGCCTCTCCTGACCCACCACATCGGGCAGCAGCCAGGCTTCACTCGTGTTCCCACTCTGTTCCCACTGTCCAAGTTCATGGTCACGTCCAGTGCACAAATTCACACAGCCCTGGACCTGGCAGCCCACTCAAGCTCAGGCCCAAAAGGCCCTTGTGGGCAGGAGCATGTGGGGTGCTCAGGGCCCAGGGGGGCCTCTTGGGGCCCAGTGGGGCCCTTGTCAGTTCCTCTTTGCTCCCAGTACGGTGCCCAGGTACTGCTGGGTCGGCCCCACCTGCACCTCCGCCTCACAGGCTCTAGCAAATGTGAACCCCAGGGTCCTCAGGGTTGCCTCACTCTTCCCCTCCCTGAGCTTCGGCTCTTTGGCCTCCAGCTCCAATCCGACCTTTCCTCATGGCCGTTTCCTCATGTCGCATTCCTCAAGCCACGATGGAGATGCAGCCATTCTCTCCCTAGGGCCCCGGGCTGGATTTTCTGGAAAGATTTGGGGTGAGGGGTGCCCCATGCCCATCCAAGGGGAGCTGTGGAGCTCCAGCTGGTGACCAGAGCAGGCAGTCCCTGCGTGTCCATGTGTGTGCACACGCTCCGAGCCCACCTTTGCCACAGCCTGCCTGTTACGTGTCCACGCAAACACACCCACTATCACCAGGTGCTACGACGGCCAACTCTTAGTCATGGGATTTGAGAGGACACTACGGATTTTTCCTCTTTGCTTATCTGAATTATCTCATTTTCAAAGCATTACTTAAGTCATTTTTAATAAGATAAAAATATAATATGAAAGTTGAAGAAATGCTGGGAAATCAGAAACTCTCAGGAGGAAATGAGGCATTTACCATGCCCATTGGGAGTCAGTCCCCACGCTGGTGTGGGTAGAGGTCACCCGCCCTCCCCTGCAGGCAGGACCCAGGAGGCCTTGGGGGATGGAGGGCTCTGTCCTCCCTCCAGGTGGGACACCGTTGTATGGACACCTCCTCCCAGAAGGTTTATCAGGGAGGGCACACTGGAGAGACGGGCAGAACGTCGGGGAGTGGGGTGGGGCACCGCTGAGGGTAGGTAGCCCTACTGACGGCCCCCTCGCCGCCCCTAG
Seq C2 exon
CAACAAAAGAGCATCTCCGCCATGGAAGGCATCATGGAGGCGCTGTCCAAGTCCGGGGGCCTGTTCGAGGTCCCCGTCCCAGACTACAAGCAGCTCAAGGCCTGCCACCGGGAGGTCCGCCTACTGAAGGAGCTCTGGGACATGGTTGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083938=DHC_N2=PU(5.1=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCAACATGAGTTCAGGGA
R:
ACAACAACCATGTCCCAGAGC
Band lengths:
238-1727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)