MmuINT0050742 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117961492-117962439:-
Coord C1 exon
chr11:117962353-117962439
Coord A exon
chr11:117961507-117962352
Coord C2 exon
chr11:117961492-117961506
Length
846 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TCTCCTTTTTTTTTTTTAAGATT
3' ss Score
10.68
Exon sequences
Seq C1 exon
CTCAAGCAGCACGAATTCAGAGAGAAGTTCCGACGTGATGCCCCCTTCTCCTTCAGTGACCCCGAGCCCTACAAGTCCCTGAATAAG
Seq A exon
GTACTTATGCACCGTGGCGAGGTCCCTGTGGCAGCTCCGGGAACCCCTTTGGAGTGCTGGTCTTTTCTTAAGCCTTTACTCTCGCAAACGGAAAAACCGAATAAATGGGACTGCCCGCAAGGCCAAGCCTGTGCGTGCACGGGACTCGCTCGTGTGCGGGTGCGTGCGGACATCCATGTGGACATGCAGACTCAGGCATCCTCCTCCCTGGCACACAGCCTCCACTGTGCCACACTGTGCTTAGGGAGCTATTCCAGAACAACCACCACCCATGCCCACATGAGCATCCTGCAAGCCTCATGGGCTGCTGTTTCCCTTCAGGCTGGTTTCCTCAGCCTATGAAAAGTTTCCTGTCACCTGGATTTAACTCTCATCCCTCCCTCTCTCCCATCCAACCAGCCACCAGGTTTTGGACGTACACACACACACACACACACATACACACACACATACACACACACACACACACACACACTTTGTTCTCTCTGCCCAAGGGTTAGAGTCAGCGTAGGATGCTCAGGTCCACCCACGGCCATGGCCCCACCATCTTGCCAAGCCAGCGTAGGTCCTCCCAGGGCAGGCGTAGAGGTTCTCAGAGCTCGGGTCAGCTCTGAACTCAACAGACCTCTTGCACTGACCCTGAGGCCAGCCCCCCGGGGACCTCAGGTCACACAGACGTGAACCCCACAAGCTCCTCCTGCAAGTCACCTCACCTCTCTCTACTCTGAACTCCCATTCTTAAAGTCAGGGCTCTCCCTCTCCCTTTCCTCATGGCCATTTCACACCACTCTCCCTGAGCCACAATCTCGACACCACTTTTTCCCCCTCTCCTTTTTTTTTTTTAAG
Seq C2 exon
ATTTACTTATTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: