GgaINT1011499 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10077544-10077910:+
Coord C1 exon
chr18:10077544-10077630
Coord A exon
chr18:10077631-10077757
Coord C2 exon
chr18:10077758-10077910
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CTTTTCCTTCTCTCCTCCAGCAA
3' ss Score
10.71
Exon sequences
Seq C1 exon
GCCCGGCAGCACGCCTTCAGGGAGAAGTTCCGGGAAAAAGCCCCTTTCTCCTACACTGACCCAGAGCCCTACAGAGCCCTCAGCAAG
Seq A exon
GTAGGGAGGGCGATGCCTGGCCACGCTGCACTGGTGGGCAGTTCCAGATAGGAGAGCCACAGCACAGTGCTGTCCCCAGGGCAGGGCACGTGGTCTCCGGCTGAGCTCTTTTCCTTCTCTCCTCCAG
Seq C2 exon
CAACAGAAGGGCATTGCTGCCATGGAGAGCGACGTGGCTGAGCTGTCCAAGTCAGCCGGGCTGTTTGAAGTGGCCGTCCCGGAGTATAAGCAGCTCAAAGCGTGCCACAGGGATGTGCGTCTGCTGAAGCAGCTCTGGGACATGATTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083938=DHC_N2=PU(5.1=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGCCTTCAGGGAGAA
R:
CAGCACAATCATGTCCCAGAGC
Band lengths:
234-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]