RnoINT0048649 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146021970-146027758:-
Coord C1 exon
chr6:146027672-146027758
Coord A exon
chr6:146022129-146027671
Coord C2 exon
chr6:146021970-146022128
Length
5543 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
CATGTGTGTTTTTTCCTCAGGCT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GAAAAGCAAGCAGAATTCAGAGAGAGATTTAGGAGCTATGCCCCTCTTGGATTTAAGGCAGAGAATCCATACTCAGTGCTCGATAAG
Seq A exon
GTAATCCGTCCTCACCGGTATCATGTGCATAACAGTAGCCATGTTAGAATGGGAGTTTTATTTTCCCTACATTAGATCATTTTAAATTATGTTTCCTCCGAACATCACCATAATCACACAAGTGAAAATGACACAGAGACTGTGTGAACCCCTACCATATGTCAAGAATGTTATCAAGCCAGCCTTGGTAGCACAGGCCTGGGATCCTGGCAGCTTGTGAGACAGAGGCAGGATCGCAAAATCCAAGACTTGCCTAGATACAGAGTGAGTTTAGGGCTGGTCTGAGTAAGTTAGTCACATCCTATCTCAAACAAAAAGGGAGGATGAGATTTTAGATCAGTATGGAGGGAGCTTACCTAGTTGGGGAGGCCTTGAGTTCAATTTCCAATAAACATATGAGCAGACATATGAGCATGTATACAGACAGACAGACAGACAGACAGACACACACACACACATATACACCCCACAGTAAGGAGGAGATAAAAAAGAGCTTTAAAAAGTATATTACATTTTAATTACCACTATAGATCTACAAGATAGCTATGATTTTTCTCCTTCCAGATGATGAAATTTAGTGTATAGTTACTTTTATTTTTCTGGTTACAGTTCATAAATTTCAGAAATAAGATTACAGTTTTGGCTATCTAAATCTTTTAAAAGAAATTATCAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAGAAATTATCAATTCTAACAGTGATGCTGCTTCCCAAGTGATTATTTTCCTCTGTGTTTTCCAGTGTAGAGATTGGTGCAGGGTCTTTGCACATATACACACACAGTAAATGCTCAACCAATGAACTCCTCCACCTCCAGTCGCCCACTGTATATAGGTATAACCACAGGAAAGCTCATAAGCCTGGTGTAAATATTGCTCAGTCTTCCAATGTATTTTTTTCATGAGTTACTTTATTACAAGAATTAACCTCAAATCCACATATGATTCATAGGAGACTTGATTCTTTGTGTTAAAAAAATACTTCAGGATCTTAACCTAGCAGTCCAAATGCTACAAAAATGACCCCATGAGAGAAGAATGTTTCCATTCGGGTGCTGTTCTTCTTCTGGGTTCTCCTTTGGGCTCTATCTTCACGCTTGGCATAGTATTTTCCCTTGGAATGGTGTCCAAATTGACATAGCTCTTCCCCCATTTTCCAAATCTGGCTTTGAATTGACTCTTTAATTGCTTTTAACCCTGCCCAGAAAGCACTGCTCTGTAGTCCCATCTTCCATTTGGCTGAAGAACGTTAGTTTATACTCATTGAAAAGGAGTGAGTTAGCATATGTTAATAAAGGATTGTTAAAAGACTATATCTAAACTCCAGGTGGTCTGAACAGATTGTGGATGGGGAAAAAAAAGTTTTTAACTTGACTCACCAATATGCTGTCTGCAAACATTTATGACAGATATGTATTGAATCTCGACACTTCCACACATACTGTAGCAGCTTATAGTTGCTTCTTACAAAGCGAGAGGTGCTCATCCTCCTCTGTTCAGGATGTGTAGCAGATACTTCAAACAGGATGGACCCAAGTTACCTTCCTCTTGTTAATATTTGGGTGTGCTTGTTTGGCTGGCAAATCCAGTACTTTGAAGAGTCAGGTTCAACCAGAGGGCATGGGTATTCTTGTTCTGCAGTGACATTGGGTGATTATATTCCAGTCATTTTGCCCCACAAGTGGAAGCCACTGACCTTCCAGGAACAAGACGGGTGATGGACTATGATAAATCCTCCCTCCCTCCCCTCCTCACACCTCCGCTCTCCCTCCCTCCCTCCCTCCCTTCCACTCTTTTCTTTCTGCAGTGAGATTTCATAGTAAGTTGCTGGTGATTGTTCAGAGCTAAAGACACAAAATAGGGGAATTACTCAAGATGAAAGGCTGTTGGCTTTGGAGAATATGCAGTCTGTGATGAGTCCTCTTGCCTGAAAGATGTTGGATGCATCACAGATGCACAGTTGTAAATCTGATGCTGTGCTCAGAAAGAAGCGAGAGAAATCTCTCATCAGCAGGATGGAGTATTTGAAAGGCGGTCGAAAGTAGGTGCGGATGTCAAATCTATGCTGCTGTAGTGACTCGTGAACATACCTGAACATACCGGAAGCCCACAGCTTTGAGATGGACACTTTTACCACAAGTATATGCTTATATCTGAACAGATGACCACAGGCTCACTGAGGTGGGTCTAGGAAAGTGCATCCAAAGTCTAGAACCTATATGAGGAGCCTCTGAGGTTTCTGTTGACCTCTGCTAAGCCTCAGAGTAACATGCAGGAAGAGGAAAGGAGTCCTCTGGAAATCTACAACATGAGCCTCTTGTCAGAAGCACCAGAGGTCCCCTTTATGCCTCCCAGGGATTGAGGAATTTTCAAAGCCAGGAAACGGAAGTGGCCAGTAGGAGAAAATTCAGATCTCTGGAGAACACAGTTCCAATCTTGGGCCTAGGGTCTTCATGGGAGCAACAAAGATAGTCAGATACCAGTGAGCAGGAAACAATGTGTAGCCATCACACCTGGGAGTCAGCAAGAGCCCTAGATGTAGAGCCATGTAAGGATCTTCAGATTCTAGAGGAAAAAAATGAGCACGCTGAAAAAGAAATGAGCAGCGTTCAGTTATGAGTCCATTAAAAACGTTCAGTTGAATCTGGAAAAGTACCAGTTACTTAAGGAAATGAAAATTACAGTTGCCTAGGATGTGCAACTCAGTAGTTAGGAAAATGAGCTAGTTAAGTGCATGTTATGTTGAAAGAAATGACTCAGAATGCAGCAAATAGATATAAGGAAACGGGGAAAAGAGAAGAAATATGGGGGAAGAAATTCTAATGTACCTAACTCCTGTGTCCTAGAAAACAGAATAAACAAAATGACAGATAGATCGAGGGTTCTCAAGAGCTTGATTGAGCACGAATCCATGGCTTCAAGAAGCTGAGCGAATCCCAAACGGGATAAGTGAAAGTGTGTCTGGTTTCATCAAAGTGAACTGCAGAATACCATGGGTGATCAGATAAAACCAGAATCAGTCGTGTCAAGAGGGTAAGAGCATCCCTCAGCAACCACAGAAACCAGGAGCCTCTAGCCATACCTTCCAAATCCTGAGTAGGGATCCAAGCACACTGGATTGCATAACACTGGGATGAACACAGTGCCCAGAGAGCCTTTACCTTCAGAAAGGGGGACAACAAGGTGAAATGTCACCTCAGGACAGAGCCACATGCCACCAGACCTCGGGAGGAGTGACCAGAGCGACAACTTCACCGCCAATGGTCTGGGAACAAGTACAGAAAGAACCAGAACTCGTGGCCACAGGGCACATTAACATAGAACTTGAAAGCTTCAGCACAAAATGCATACATTTTTTATAAAGATTTTTCCCCCAGAAATAGTAAGTCTATATGGTGTTTTTTCTCATCTTTGTAATAAAATATCTGGCAGGATTAATTTATGGAGGGGATTGTTTTGACTCACAGTCTGATGGCCTCATGGTGGCTGTCACAGTGGCAGGAGTGTGTGAGGCAGCTGGTCTCAGCTCATGAGCCAGGATCCGAAGCGGTGCTGATGCTGCTGACCCAGTTCACGGTCAGCCCATGGAATGGTGCCATTCGTCCACATTTAGAGCAGGTCCAGAGGTTTGTCTTCTAGGTGATTATGGATCTTATCAAGTTGAAAATACATCACAGTGACATAAAAGTCAGTAGGAAGAGAAATTAAAAAAAAAATAAGCCATTGGGACCTGGTATAACAGCTGTTTGTAGCTCGTTCATGTTGCGTTAGGTATTAAAGGTAACCTAGAGGGTTTTTAAGTACAGGGGAAGATGCTCGTGTCATATGCAAATGTGTGCAATTTAAGTAGGGGACTAAGTGTACTTGGATTTCAGGTACTTAAGACAGGGCCTTGGAATCTTCTGTAGATATAGAGGCACAAACATATTATACAACTGGCTAACGGCAGTGTTCTGACATTTAAAAATCTCTAAGAGCACATTAAAGTGTTTTCTTTGGCACTACACGCCAAAAACCAAGGCGAATGCATATATGGAGAAGATTCATATTTTAAAACACTAACATAATAAACAGAAAAATATTTGTTTGTCAAAAAAGGTTAAAATTGATGGGACGTAAAAAGATCAATTGTAGGTTTTAAGGAGGAAAAGTAAAGAAATTCTGTCGCTGGACCTTGGGAGGAAGAGGGAAGGGAATGTGAAACAGAAAGCAAAATCAAATCGGCTCTGCTTTGCAAAGTTAGGCACTTGGTGTCGGGTTGCAACCTGAGCCCAAGAGCAGAGGCTGCATATGGAGTGAGCATTGCAGACACAGCAACAGGAAGGACAAAGAGACCGTGAGCGACTGTGGTTACTCCTTTCACACTGTGAACACACTGCCCTGATAATAGAAAGTAAAACTAAGAGTTGCTCATCAAAGAAAGTGGAAAACAAACTGATTTCCACTAGATGCAAAACATTAGTTTTTCTATGTGGCAGGATAGTAGGTGAACCTTGGCAAAGGCGATTATTAGGAGAGATTCAAACTCTGTGTGGTGTGTGAGTGTGGGTGGGTGAGTGTATGTGTGTTAGTGTATGTGTGTGAGTGTGAGAGTGAATGTGTGTGTATGTGTGTGTGTGAGAGTGTGTGTGAATGTGTGAGTGTGTGTGTGAAAATCTACTCTGGATGTTGTTGGGCATGTGCATGCTTGTGTGTATACATTCTTGAGTGTGTCTCGTACTATTGATCATCCACAGAATCATTTTGAAGTTGGAGGTTTCCTTCCTCCCTTCTTTCTCTTTCTTTCCTCCCTTCTTTCCTTCTTTCTTTCATTTCCTCCCTTTCTTTCTTCCTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTCTTTTCTTTTCTTTCCTTCCTTTCCAGTGTCTTACTCTGTGGTCCAGGCTGGCTTTGAACTCTCAATGATCCACCTACCTCAGCCTTCTGCATGCTGGGATCATAAACATGATGTACTACTTACAAATAAAGGTGCGTTCTCTCTCGAGCGCACGCTCTTGCTCTCTCTCTCTCTCTCTCTTTCTCTCCCCCCCCTCCCCTTACCCTCTCCCCTCTCTTTCTTTTGGTTATTGTTTTGTTAAACTACGAAATCAAAGAGAAGTTGGAATTGGGGAAGGACTTACACGAGGGGGTACTGGGAGGAGAGGAAGGGCAGATATAATTTGTAAAGTAAATAAAAATATTAAAGCTAATTGTATATTAAAGCATACACGCACGCGCACACACACACACACACACGCGCGCGCGCTAAATCCCAACATGAAACTTCCCTTGTCCTTGAGCAAAATCTCAGCCTCACCATGAAACTAAAAATTTACCAGTAATTACCCTACAGAGTTTTTATTTAAATTTCCCTTTGAGACTCACAATTTGAATAATGCAGTAGCAGAACCAGGAATGGTGGCTTCAGTGCGCATGTGTGTTTTTTCCTCAG
Seq C2 exon
GCTAATCAGGAGCTTGAGGCTCTGGAGGAAGAGGTGGTGCAGATGCAAAACTGCGCACGTCTCTTCGAGGTGGTTCTTCCCGAGTACAAACAAATGAAGCAGTGCCGCAGGGAAGTCCGGCTGCTCAAAGAGCTCTGGGATATCATCGTTTACGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083938=DHC_N2=PU(11.6=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]