MmuINT0050774 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117928205-117928986:-
Coord C1 exon
chr11:117928825-117928986
Coord A exon
chr11:117928370-117928824
Coord C2 exon
chr11:117928205-117928369
Length
455 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
AGCATCTTGTCTTGGCCCAGGAT
3' ss Score
4.66
Exon sequences
Seq C1 exon
GGCATCTTATTCTCCACAGCAGAGATTCTGAAAACCCCGCTGGACCTCGTCCGCCTTTGGCTGCATGAGGCTGAGCGAGTGTATGGGGACAAGATGGTTGATGAGAAAGACCAGGAGACGCTGCACAGGGTCACCATAGCATCTGTCAAGAAATTCTTTGAC
Seq A exon
GTAAGTTTAAGCTGTCAGGTTCCCCTGCTGTGCCCACAGAGGGTTCAGCGGTTAGGGCCAGGGATGCCCACGGCCTCTGGGAAGGTCCTTTGTTGGGTACAGGGAGGCCCAAGTGATGGCTCCAGCATGTAGCAGTGTGAGTAGTGAAAGAGAATTAGCCGTTCTGAGAGCGTGACCTCGTGTTCTCCACCTGAAAGGGGCACAGCTGCCTCAGTCCTTGTCACCTGTTGCCACATCCCCAGTGCTCTCAGACCATGCAGTCGGTCATCCCACATCGTGGATCACCCTATGGGAAGGGAGTGTCCAATGAGAGTAAGGGCTAGCACAGTGACAGTCTGGGTCATTGGTGTCATGACCCAGCCTAAAGGCCTCATGGGATCCCCTTGGAAGGCGTGGTGACCACGGGCAGGGGTCTGCTTGGTAGCACGGAAGCAAAGCATCTTGTCTTGGCCCAG
Seq C2 exon
GATCTTGGGGAGGAGAATCTCTTTGCCAAACCCAACATCTTCTGCCACTTTACGCAAGGAATCGGTGACCCCAAGTACTTCCCCGTCACGGATGTGGCACAACTGAACAAGCTGCTGAAGGACGTCCTGGACAGTTACAACGAGGTTAACGCAGTCATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:52
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(3.4=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTTATTCTCCACAGCAGA
R:
AGGTTCATGACTGCGTTAACCT
Band lengths:
326-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: