DreINT0058327 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10397271-10397720:-
Coord C1 exon
chr6:10397559-10397720
Coord A exon
chr6:10397465-10397558
Coord C2 exon
chr6:10397271-10397464
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CTTCTCATTCTGTGTTGTAGGGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGAATTCTCTTTGCTCTGCCAGAGCATGTGCGGTACCCTATAGACCTAGTGCACCTATGGTTGCACGAGTCGTCTCGTGTGTATTCAGACAAACTGATGGAGGAGAAGGATGTGGAGCTCTTCAACAAGATCCTGTTGGACACGGGCAAGCGATACTTTGAG
Seq A exon
GTCAGCTGAACTTCTCAAGAATTTCATAAAACGTGGAAAACCAATTGTCAAAAATAATTGGCTCTTCCTTTTCCCTTCTCATTCTGTGTTGTAG
Seq C2 exon
GGTATAGATGAGTCTATTTTTATCAACCAGCCATTGATCTACTCTCATTTTGCTCATGGTGTGGGTGAGCCGCGTTACGCGCAGGTGACTGACCTGGAGAAGCTTCAGAAGACACTGATGGATGCTCTCGAGCACTACAATGAGCTGCACTCTGACATGAATCTGGTGCTGTTTGAGGAAGCCATGCAACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGCAAGCGATACTTTGAG
R:
TGCAGCTCATTGTAGTGCTCG
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]