BtaINT0050278 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30618853-30619462:+
Coord C1 exon
chr4:30618853-30619014
Coord A exon
chr4:30619015-30619268
Coord C2 exon
chr4:30619269-30619462
Length
254 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
TTCACTTCCTCCTCCTGCAGGGT
3' ss Score
11.69
Exon sequences
Seq C1 exon
GGGATTTTATTCACCTCTCCTGAGTGTTTAAAGTGTCCAAATGATTTAATACGCCTGTGGCTTCATGAATCTTCTCGTGTTTATGGAGACAAACTGATAGACACAAAGGACTGTGATTTGTTTCATAAAAAACTGCTGGAAACTGCTAATAAATACTTTGAA
Seq A exon
GTAAGCAGATGAATTCCAAAGGTCACTATGTGCTCTGGCATATTGGCTTTTGGGCAGAAATGGGATAAGGATGTGAATGAATTGTATATATGATTCCCTTGCTGAAACAGCTGTGATTCCAGATCTCTACAGGGGAAGATGACATCCACCCATGGGTTGATTTACAGGCTTTTCCCTGGACCGGTCACTCTGCCTCCAGATGAATCATTTCTGGAGATTGACATGACCGTATTTTTCACTTCCTCCTCCTGCAG
Seq C2 exon
GGTGTAGCTAGCCATGTGCTGCTTCAGCAGCCCCTCATCTATTGCCATTTTGCTAAGGGCAGCCAAGACCCGTGCTACATGCCGGTGAAGGACTGGGAGGTACTGAAGACGTTTCTGACGGAAGCACTGGATGACTACAATGAACTCAATGCCGCCATGCACCTCGTTTTATTTGAAGACGCCATGCAACATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGGCTTCATGAATCTT
R:
ACATGTTGCATGGCGTCTTCA
Band lengths:
304-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]