GgaINT0127373 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1084935-1087112:+
Coord C1 exon
chr18:1084935-1085096
Coord A exon
chr18:1085097-1086915
Coord C2 exon
chr18:1086916-1087112
Length
1819 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
CGTATGTGTTTCTCTGACAGGAC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGCCTTCTGTTTTCTACCCCTGAATGTCTGAAGCAACCGCAAGACCTGGTGAAGCTCTACCTGCATGAGTCAAACCGGGTGTACCGGGATAAGATGGTTGAAGAAAAGGATTATGGCACCTTTGATAAAATCCAGCTGGAGATGGTGAAGAAGTTCTATGAC
Seq A exon
GTAAGTGTTGAGGTTCACGACCCTGATAGTAAAGTGTACACTCACAAGAAAAGTCGAATTCCTTGAGAGAACAGAGTTTGACTCAGTCTGCCCACCTCTTGCTTGCCTGGAGGGCAATGGTCCTGGCAGGAGCCCAGGAGCAACATCTGTCATTCATGTTCTGGGCTGCCAATGTTGTGATTCACCCCACAAAGTTCTTGGGAAGAGGAGATTTGTGAATTGACGTAATTGATGTATTTAAGTGCTTTGAGTCTCACATGCACAAGGGGAGAAGGGTCATCCAGCAGGGGCTCTAAGTGGAAGCAAAGGGGGATGCAGGCACAAGTCCTTAGCACATGGGTGTCCAACTTGTTGTCTTGCCTGGGCCACACTGAGTGAAGAGGAATTGTCTGTGGACGCTTATGAAATATGCAATAGAGTTAATGTATGTAAGTAACAAAATGTTTAATACGTATCTATTAAAATAAAAAAAAAAAAAAAAGAGAGAGAGAGCAACAAAACCATAAAACCAGTGGGATATTTGACCTTGTTTTTTGTGGAACTAATGCACCAGTCTGGTTCTATGGAAATGGTTGCAGTTCTCAAGGTGCACATCAGACATTTTTTAATGAAATTTGGCTCTTCCTGTGCTTCATCCTTGCGAGCAGCTGATCACAAATGTACACACTGCTGAAAAGCAATGATGTGAATAAGGCATGTGGCCACTCTTTCAATTTCAGGTTCCAAGCCCCTTTTTCAGGGCCTAGAGCCTTGGTTTCAGGTTCAGAGAGTCATTCTCAGGGTCCAGACCCTCACTGTAGTGTACAGAGCCTCATTTTAAGGAACAACTCTTCCTTTTTAAGTCACAATCTCATAAAGCTCTGTCCTATCTCTTGGAGGTTAGAAAACGTATGAACAGGAGCCAGGGGCTTGATTTTATAGACCATAGCCTCATCATTAAGCACCAAACCCTGAGTTTCCAGGCCTAGAGCCTGTACTTGGGATCCAGAACCACTGTTTTATCACCTACAGCCTAATTTTTCAGTCCTGGAGTCTTAGTTTAGGGCCCAGAGCATTAATTTTAGGGCACAAAGCCTCCTCTTTGATGTCCATGTTCTCTGATGGGACAAAGCCTTGTTCTAGGGGCCAAGGTCTGAATTTTAGAGCTCAAAATCTGCTTTGACAGCCAAACCCTCTCCCATCCACCAGCCACCAACACTGTGAGGGCCCAAAGCCTCATTTCAGAGCCCAGAGCCTCCTTTCTAGTGACTAAAGCCACATCACAGGGACCGAAGACTGATATTCAAAGCCTGAAATCTCTTTTGAGGATGAAATGCCCATTTTGATAGATCAAAGCACCACTTCAGGATCTGACTCCTGAGCTGGAAAGTCGAAAGCCCTTTCAGAGCATAAGCCCTCCTTTTCTACTCTAAAGCGTATTAATGGGGTCCAAAGCTGCTTTTTTCATTGGCCAAAGCCTCCTTTAAGCCAGGTTGATGATTGTTCATGATGATCTTGAAGGTCTCTTCCAACCTAAACGTTTCTATATGTTATGGCCGTGGCTGCAGAGCTTTTCTTATGGCCACATTCTCCTATGGCAATGAGTTGAGTTTTCATGAGTTCCAGAAAGTTGTGAGAGTGAAGGATATTAGTATCAGGGCTTTTATTCTTTCCTCCTTTTTCTCTCTTGCCCTCTTTAACCTTTTCCAACACGCAGGTGCAACTACATGGGCATTAGAAGGCATTACTAGTTAACTGTGCTTGGAAAGATGACACAGAGCTGTATTTTTATTTCAGTATTTGTTATATACACGTGTATACGTATGTGTTTCTCTGACAG
Seq C2 exon
GACATTGAGGAGACCTTAGAGCAGACCAAGCAAATGAATGTTTATTGCCATTTTGCTAAAGGCATTGGCGAACCTAGTTATAGGCCTGTTCCAACCTGGGAGGAGTTGAACCAGATCCTCGTGGAAGCCTTGGAAAACTACAATGAAGTCAATCCTGCCATGAACCTGGTGCTATTTGAGGATGCCATGTGCCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTCTGTTTTCTACCCCTG
R:
TGGCACATGGCATCCTCAAAT
Band lengths:
356-2175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]