BtaINT0050822 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31127472-31128686:+
Coord C1 exon
chr19:31127472-31127633
Coord A exon
chr19:31127634-31128489
Coord C2 exon
chr19:31128490-31128686
Length
856 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CCCCTGTGTCTCATCACCAGGAC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GGTATTCTCTTCTCCTCCGTGGAATGTGTCAGGTCCTCACAGGACCTAGTAAATCTCTATCTGCACGAATCGAATCGGGTTTATCGGGATAAGATGGTGGAAGAGAAGGACCTTGATCTTTTTGATAAGATCCAGGTAGACGTGGTCAAGAAAATTTTTGAT
Seq A exon
GTGAGTATTGCCCTGTGAATTTCTGCTTACATCTGAAAAAGAATAGTGATTATGCAAGGATCACCAAAATGATAAAAATCCAGCCCTTAAATTGAAGAAAATCATATTTAGATAAAGAAAGAAAGTCTGTCCTTAGTGTGACAAAGTGGAAAATTCTGGGGCAAGAAGAGATACACATTAACCATAGAATCTCGGTCTTGTGAGGCCTGTGAAGACCATCTGACCATATCCTTGTCCTTTCCCCAAATTGGTCATCCCAGCTGACACACCAGCATCCTTGGAAATTCAGAGTCTCGTCTCTGCAGAGCCAGCCACTTTGGAACTGCTACTGGCTGGAAATTTGGAACAAGTCTGAAACTTGGAACATTTGGAACAACTCTAGAGACTGAAGATTTATTTAAATAGTGATTTAAAATGTATTTCCTGGGTTATGCCCCTGCTGTTGAACAGCATGCTGATCACCCTCTTCCCAAGTGAGTCCTCCAGTCTGAACCTTAGAAGGAAAGAGTGGCAGGTGGGAACAATTGCTCAAGCTGACATAAACTCCTCCTGATGCATTAGAAAGCCTGTTCTTTCTTGGACTCACTTTCATAACAATCTCCACCTCTCAAAATCCCAAGTATTTGGGTTTTGATAAGTAAACAATTCCTTTCTGGATTATAAAAAGAATAGCTGTCCCTTTGAAACTTCAAGGATGGCTTGGTAGTGACGAGACAAAGACCCCCTGTCTTTTAAGTCAGGTGAATGGTACTGGGTATTTTATTTTCTTATACATAATAAGATTTGTCTCCACTCTGTGTGGGAGCAGACCCAAGAGTCGGTCAGGAGGGTCCTTGCCCCTGTGTCTCATCACCAG
Seq C2 exon
GACCTTGGAGAGACTGTGGAGCAGACCCAAAGCCTGAACGTGTATTGCCATTTTGCACACGGTATCGGGGAGCCCAAGTACATGCCTGTCCAGTCGTGGGAACTTCTGACCCAGACGCTGGTGGAGGCCCTGGAGAGCCACAACGAAGTCAACACGGTGATGGACCTGGTGCTCTTCGAGGACGCCGTGCGCCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.0=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCCGTGGAATGTGTCA
R:
GCACGGCGTCCTCGAAGA
Band lengths:
342-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development