HsaINT0050079 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11793503-11797793:+
Coord C1 exon
chr17:11793503-11793664
Coord A exon
chr17:11793665-11797596
Coord C2 exon
chr17:11797597-11797793
Length
3932 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TTCCTGTGTCTCATCACCAGGAT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGCATTCTCTTCTCCTCAGTGGAATGTGTGAAATCCACATGGGATCTTATAAGGCTCTATCTGCATGAATCAAATCGAGTTTATCGGGATAAGATGGTAGAAGAAAAGGACTTTGATCTTTTTGATAAAATCCAGACAGAAGTGCTCAAGAAAACTTTTGAT
Seq A exon
GTGAGTATTGCCCTATGGATTTTCTTTGTATTTGAAAAAAAAAAAGATAATTATACAGATGATCACCCAATGATAAAATCTAGCTGTTTAATGGAGAAAGGCCAGAGTTTAGGTGAGGAAGGAAATTCTGTCATAATTTTGCCCAGGTAAAAAAATGCTGGGGCAAGAATAGATGCAAATTAATCCCAGAATCCCAGTGTTGAAGAAGTCCATAGAGATCATCTGATCCAAGTCCCCACATGGTACTTAGTCCCCTAGCAGCATTTCTCAGATTGGTTACCCCAGTGATGCTCTAGCATCCTTGAAATGCATCATCCCATTGTTTCCAAGGCCGCCATTTTGGGGCTGCTAATAACTGGAAATTTTGAGCAATTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTTTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGAGTTTCACTGTTTCACCGAGGGTTTCACCAAGGGTTTCACCGAGGTCGATCTCCTGACTTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGAGCCCGGCCTGAGCAATTTTGAAACTTGGAACATTTGAAATAATTTTAAAGACTGAAAATTTGGTCTAATAATAATCTAGAAGTTATTTCTCTGTCCACTACCCAGGTCTACATGACAAACTCTCAAATATTTTAATGCCACTTATCTCACTCTTCCTGAGTCTTCTCTTCTCCAGGCGAAATAGCCTGAATCCTTTTAACCATTTCTGACATGGATTGGTTTCAAACTTAAAGAACTCTGACATCCTCCTGATTGCTCTCTCACCAGTTCTCCCCTCTGAAATTGTGATGCCTGACTTTTCGTTGCACAACCCAGCTGGGGTCTGACCAAAACCAAGATCATCATTCCCCCTTTTCTTAAAGACTATAGTTTTGTTTCTGTGTTTCCCAAAATGTGTCCTGCTAAGTAGTTTTGCTACAAGATACTTCTTGAAAAAGAGTCTCTGTCATGAAATGAGTTGAGAAAATGTTTCACTGTATATGACTCTCTTGGAAATTCACAGTGGATTTAAGGCATTAACGTTCTGCACTTGGACACAGGAAGGGGAACATCACACACAGGGGCCTGTTGTGGGGTGGGGGGAGGGAGAAGGGATAGCATTAGGAGATATAACTAATGTAAATGATGAGTTAATAGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCATGTTGTGCACATGTACCCTAGAACTTAAAGTATAATAAAAAAATACATATATATATATAAGACATTAAAGTTCTGAAATCTTGAATAACTCTAATTCACATATCATTCCCCAAATGTATTGGACCCTAAAATTCTTTCCTCTCATTAAACCTATTAATAATTTACATAATGAATGGCCCATGGATTATGCCTTGGGAGGCATTGATATAGTAGCACAACCTGAGATCGTATTCTATTTCTTAGCGTCGAAATTACCCCACAGTTAACAATGAGCCTTCTATTAACCAAAGCCCCATCTTTTCCACACATACTGCTTGTCTGTTCCCTCTGGAAATTAGAAATATTCAAATTTTGTATTTAGGTATGCTATGTTGTCCTCATACTCACCTTGTTTGGTTTAGCTCCGTATTTTTTTCCTGGTAAGATCTTGACTCTACCTCTGAAGATATCTGCAGTCCATCCCAACCTATGTGACAGCCTTTTGAATGTTTAGACAGCATTTTAAGTCACTTATTTTATTCTGCTTTTTACTAAGCCAGCTGTCCTAAATTCTCCCACTTCTCTCAGCATTGTTATTGGGGCCTGATGTTTGAGACCCTCATGTTAGATGCCCTTCTCTGAGCATCATAGAGTTACCCAATTCAGGTATTCATTGTTGGCCTGGCAAATTAGTCTTCATGGTCTTTACAAGTCGGTCTGAGCTAGCACTTCAGAGTAATAACACTTGAACTTTCAAATAGAGTTCCATGTGTGGGTCTGTGTATGAAGAGCACTGCCTTTTGATCACAGACCCAGATATATGAATATTGCCATTATCCTTCCCCAACAACATTTGAAATGCCAGCCTGAAGCACCCTTGGTCACACCACATCTTGGTATTGGTATCAAGGAAAAGTTGCCAGATTTTCACCAACAAAGCAATAAAATCCTGTTTCCACTATTCAAAGCTTAAGCTTCTCTGATTCATGGCCCTGTGTGATTTGGCATCACTATTAAGGAATCTTTGATTCACTGAGTTGGTTGATTTTCTCTCTGCCTTCTACACAGCATGGCTCTGATCATAAAATCACAGACTTGTTTTGTTCCTCAAAGAGTCTTTGTAAACCAGCCTTTTCAAAACTGCACTTTAGTTCCTCCTCCGCTAGATGGTTTTTGTCAATTGACTAATATGAGAACTGATTCCCAGGACATTAGCCCATTCTCAAACAGGGTAAATGTCTTCCCACATTACATCCTCCATCCTCATGTGTTTTCCTAATAGCAAGAATAGTCCTCCTGCACTGCGCTTACATCTTATCCAAATGTCTGAGCATTTTTGTTATTGTCTGGCAAAGCCAGAATAGTTTAAAAGTTTTCTATAGTTTTTGAAATCACCTTCAAAATCTAATAACTTTTTTATTTTTAACTCTTTCCAGTCCTTTCTTCTTACACCCAGGCAGCAGCCCTGGTTTCTCTATAGATGTTACTGTCTTCCTCACTTTCCCTATATTAGGTTTGGTGAATCTCATCCCATAGGTTACAAGGCTTACCCTGCAGTGACTTATGCCCTGGGACGTGTCCCTGCTGATAAATAACACACTGGTTACCTCTTTCCCAGGTAGGTCTTCCAGTCTGAACTTTAGGAGGAAAAAACGACAGGTGCGGACAACTGCTCATGCTGGCATAACTTCCTATTTGTGTCTTAGAAAGCCTATTCTTTCTCGGACTTTTCTCCTCGACAACCTTTCCTCTATCTCAAGTCTCAGGTATTTGGGTTTTGACAGGCAAGTAGTTCCTTTTTGTCTCCACTAACATGAAAGTTAAAAAATTGGTCTTCTCTTCAGTACTTAGAGATATATTGGTGAAGAGACGCAGACTCCTTATCCTTCAAATGAATTGAGTTATACTATACTATAACCAGCCCGTATTTATTCAACATGGTAACATTTCTCCTATGGGTGAGATTTGACACACAGCCCGAAAGTGTTGTAAGTAGGGAGTTCTACCATAAATGCGTTAAGATTACCATAAATAAACCAGTCACCTGAGGGTGGCTAGTAGCGCATTCTTCAGAAACCAAGCCCTCTGGACTGAACCTATGAATTCAGGGCTGGCAACATACTTGTGTAATCTCACAGGAAAAGATGTTGGATGGCTTTGCTGCAGATTGAGGACCTAGATCTGTTGGAATGTACATGCAGAAAGTGAGGCGATTGGGCCACGATCCCCTTCATTCAATACTGGTGAAAGAGCCCCCACTTAGAGAAATCCACCCATCCATCCCCATCCATTCTTCTCACAGAAGCACTCTCTTACCGTGCTTGTGAGGAGGCCCCATCCCACCTCCCACTTCCCATCCTCAGTCCTTAAGGAATAACAAACATCACCTGAGACTTCATGGAGCTGGTAGATGGATGTTAAGCATCCACTTAAAAGGGCTTCTCAAGAGAAGGGCATGTTGGAAGTAGCACTGATGCCTAATTTCCAGGGAATGTGCAGAGCAAATCAGGTGTCTCTGCTCTGTGGAACCAGCCCCAGAAGTCAATAATGAGGGCCCTTATTCCTGTGTCTCATCACCAG
Seq C2 exon
GATATTGAAGACCCTGTGGAGCAGACCCAAAGCCCGAACCTGTATTGTCACTTTGCAAATGGTATTGGGGAGCCCAAATACATGCCTGTACAGTCTTGGGAACTTTTGACCCAGACTCTGGTGGAGGCCTTGGAGAACCACAATGAAGTCAACACAGTGATGGACCTAGTTCTCTTTGAGGATGCCATGCGCCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development