HsaINT0050079 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11696820-11701110:+
Coord C1 exon
chr17:11696820-11696981
Coord A exon
chr17:11696982-11700913
Coord C2 exon
chr17:11700914-11701110
Length
3932 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TTCCTGTGTCTCATCACCAGGAT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGCATTCTCTTCTCCTCAGTGGAATGTGTGAAATCCACATGGGATCTTATAAGGCTCTATCTGCATGAATCAAATCGAGTTTATCGGGATAAGATGGTAGAAGAAAAGGACTTTGATCTTTTTGATAAAATCCAGACAGAAGTGCTCAAGAAAACTTTTGAT
Seq A exon
GTGAGTATTGCCCTATGGATTTTCTTTGTATTTGAAAAAAAAAAAGATAATTATACAGATGATCACCCAATGATAAAATCTAGCTGTTTAATGGAGAAAGGCCAGAGTTTAGGTGAGGAAGGAAATTCTGTCATAATTTTGCCCAGGTAAAAAAATGCTGGGGCAAGAATAGATGCAAATTAATCCCAGAATCCCAGTGTTGAAGAAGTCCATAGAGATCATCTGATCCAAGTCCCCACATGGTACTTAGTCCCCTAGCAGCATTTCTCAGATTGGTTACCCCAGTGATGCTCTAGCATCCTTGAAATGCATCATCCCATTGTTTCCAAGGCCGCCATTTTGGGGCTGCTAATAACTGGAAATTTTGAGCAATTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTTTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGAGTTTCACTGTTTCACCGAGGGTTTCACCAAGGGTTTCACCGAGGTCGATCTCCTGACTTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGAGCCCGGCCTGAGCAATTTTGAAACTTGGAACATTTGAAATAATTTTAAAGACTGAAAATTTGGTCTAATAATAATCTAGAAGTTATTTCTCTGTCCACTACCCAGGTCTACATGACAAACTCTCAAATATTTTAATGCCACTTATCTCACTCTTCCTGAGTCTTCTCTTCTCCAGGCGAAATAGCCTGAATCCTTTTAACCATTTCTGACATGGATTGGTTTCAAACTTAAAGAACTCTGACATCCTCCTGATTGCTCTCTCACCAGTTCTCCCCTCTGAAATTGTGATGCCTGACTTTTCGTTGCACAACCCAGCTGGGGTCTGACCAAAACCAAGATCATCATTCCCCCTTTTCTTAAAGACTATAGTTTTGTTTCTGTGTTTCCCAAAATGTGTCCTGCTAAGTAGTTTTGCTACAAGATACTTCTTGAAAAAGAGTCTCTGTCATGAAATGAGTTGAGAAAATGTTTCACTGTATATGACTCTCTTGGAAATTCACAGTGGATTTAAGGCATTAACGTTCTGCACTTGGACACAGGAAGGGGAACATCACACACAGGGGCCTGTTGTGGGGTGGGGGGAGGGAGAAGGGATAGCATTAGGAGATATAACTAATGTAAATGATGAGTTAATAGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCATGTTGTGCACATGTACCCTAGAACTTAAAGTATAATAAAAAAATACATATATATATATAAGACATTAAAGTTCTGAAATCTTGAATAACTCTAATTCACATATCATTCCCCAAATGTATTGGACCCTAAAATTCTTTCCTCTCATTAAACCTATTAATAATTTACATAATGAATGGCCCATGGATTATGCCTTGGGAGGCATTGATATAGTAGCACAACCTGAGATCGTATTCTATTTCTTAGCGTCGAAATTACCCCACAGTTAACAATGAGCCTTCTATTAACCAAAGCCCCATCTTTTCCACACATACTGCTTGTCTGTTCCCTCTGGAAATTAGAAATATTCAAATTTTGTATTTAGGTATGCTATGTTGTCCTCATACTCACCTTGTTTGGTTTAGCTCCGTATTTTTTTCCTGGTAAGATCTTGACTCTACCTCTGAAGATATCTGCAGTCCATCCCAACCTATGTGACAGCCTTTTGAATGTTTAGACAGCATTTTAAGTCACTTATTTTATTCTGCTTTTTACTAAGCCAGCTGTCCTAAATTCTCCCACTTCTCTCAGCATTGTTATTGGGGCCTGATGTTTGAGACCCTCATGTTAGATGCCCTTCTCTGAGCATCATAGAGTTACCCAATTCAGGTATTCATTGTTGGCCTGGCAAATTAGTCTTCATGGTCTTTACAAGTCGGTCTGAGCTAGCACTTCAGAGTAATAACACTTGAACTTTCAAATAGAGTTCCATGTGTGGGTCTGTGTATGAAGAGCACTGCCTTTTGATCACAGACCCAGATATATGAATATTGCCATTATCCTTCCCCAACAACATTTGAAATGCCAGCCTGAAGCACCCTTGGTCACACCACATCTTGGTATTGGTATCAAGGAAAAGTTGCCAGATTTTCACCAACAAAGCAATAAAATCCTGTTTCCACTATTCAAAGCTTAAGCTTCTCTGATTCATGGCCCTGTGTGATTTGGCATCACTATTAAGGAATCTTTGATTCACTGAGTTGGTTGATTTTCTCTCTGCCTTCTACACAGCATGGCTCTGATCATAAAATCACAGACTTGTTTTGTTCCTCAAAGAGTCTTTGTAAACCAGCCTTTTCAAAACTGCACTTTAGTTCCTCCTCCGCTAGATGGTTTTTGTCAATTGACTAATATGAGAACTGATTCCCAGGACATTAGCCCATTCTCAAACAGGGTAAATGTCTTCCCACATTACATCCTCCATCCTCATGTGTTTTCCTAATAGCAAGAATAGTCCTCCTGCACTGCGCTTACATCTTATCCAAATGTCTGAGCATTTTTGTTATTGTCTGGCAAAGCCAGAATAGTTTAAAAGTTTTCTATAGTTTTTGAAATCACCTTCAAAATCTAATAACTTTTTTATTTTTAACTCTTTCCAGTCCTTTCTTCTTACACCCAGGCAGCAGCCCTGGTTTCTCTATAGATGTTACTGTCTTCCTCACTTTCCCTATATTAGGTTTGGTGAATCTCATCCCATAGGTTACAAGGCTTACCCTGCAGTGACTTATGCCCTGGGACGTGTCCCTGCTGATAAATAACACACTGGTTACCTCTTTCCCAGGTAGGTCTTCCAGTCTGAACTTTAGGAGGAAAAAACGACAGGTGCGGACAACTGCTCATGCTGGCATAACTTCCTATTTGTGTCTTAGAAAGCCTATTCTTTCTCGGACTTTTCTCCTCGACAACCTTTCCTCTATCTCAAGTCTCAGGTATTTGGGTTTTGACAGGCAAGTAGTTCCTTTTTGTCTCCACTAACATGAAAGTTAAAAAATTGGTCTTCTCTTCAGTACTTAGAGATATATTGGTGAAGAGACGCAGACTCCTTATCCTTCAAATGAATTGAGTTATACTATACTATAACCAGCCCGTATTTATTCAACATGGTAACATTTCTCCTATGGGTGAGATTTGACACACAGCCCGAAAGTGTTGTAAGTAGGGAGTTCTACCATAAATGCGTTAAGATTACCATAAATAAACCAGTCACCTGAGGGTGGCTAGTAGCGCATTCTTCAGAAACCAAGCCCTCTGGACTGAACCTATGAATTCAGGGCTGGCAACATACTTGTGTAATCTCACAGGAAAAGATGTTGGATGGCTTTGCTGCAGATTGAGGACCTAGATCTGTTGGAATGTACATGCAGAAAGTGAGGCGATTGGGCCACGATCCCCTTCATTCAATACTGGTGAAAGAGCCCCCACTTAGAGAAATCCACCCATCCATCCCCATCCATTCTTCTCACAGAAGCACTCTCTTACCGTGCTTGTGAGGAGGCCCCATCCCACCTCCCACTTCCCATCCTCAGTCCTTAAGGAATAACAAACATCACCTGAGACTTCATGGAGCTGGTAGATGGATGTTAAGCATCCACTTAAAAGGGCTTCTCAAGAGAAGGGCATGTTGGAAGTAGCACTGATGCCTAATTTCCAGGGAATGTGCAGAGCAAATCAGGTGTCTCTGCTCTGTGGAACCAGCCCCAGAAGTCAATAATGAGGGCCCTTATTCCTGTGTCTCATCACCAG
Seq C2 exon
GATATTGAAGACCCTGTGGAGCAGACCCAAAGCCCGAACCTGTATTGTCACTTTGCAAATGGTATTGGGGAGCCCAAATACATGCCTGTACAGTCTTGGGAACTTTTGACCCAGACTCTGGTGGAGGCCTTGGAGAACCACAATGAAGTCAACACAGTGATGGACCTAGTTCTCTTTGAGGATGCCATGCGCCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)