MmuINT0051238 @ mm10
Intron Retention
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65976337-65981347:-
Coord C1 exon
chr11:65981186-65981347
Coord A exon
chr11:65976534-65981185
Coord C2 exon
chr11:65976337-65976533
Length
4652 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCCCTGTGTCTTCTCTCCAGGAT
3' ss Score
12.17
Exon sequences
Seq C1 exon
GGCATTCTTTTCTCCTCCGTGGAATGTGTAAAGTCCACACAGGACCTAGTGAAACTCTATCTGCACGAGTCAAGTCGGGTTTATCGGGATAAGATGGTGGAAGAAAAGGATTTCAATCTTTTTGACAAAATCCAAACAGAATTCCTCAAGAAAAATTTTGAT
Seq A exon
GTAAGTATTGCCTGTGCTCTTTCTATATTTGAAAAATAATGAGGACCATGAAGGTGATCACCAAAACCACTCTAGTCCATGAAGTCAGGGAAAGCCAGAGATTGGGTTACAAAAAGAAATTCTATCATGACTTTGCCTAGTCAAAAAAAAAAAAAATGATGGGCAAGACACCATTTCACATCTATGGATCCCTAGAAAGCATCTGATCCAAAGGCTATAATACTGAGGTTCTTTCTAGCTCCCCAGGTGACATCTTGGATGGTGTTCAGCACCCTGAGATTGTGAGACCCCATCACTCTTATGATAGCCATTTTGAAAGTGTTAAAAACTGGAAATGTGGAATAATTCTGAAACTCAAAGCATTTATAATTATTCTGGATAGTAGGTGTTTATATTAATGACTGAAACTGTATTTTCCTGTCCAAAAATCAGAGAGAAGGACTTCTGGTGATTGTTCTCTCATCAGCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCTTCCTCCTCCTTCTCTTCTCCCCTTCCCTTTTCTCCTCAATCTTCCTTTACTATGAGACAAGATTTTGCCATACAACTAAACTGTCCTTGATCCACTCTGTATCACTATGTGTCACTATGCAGACCAAGCTAGCCTTGCACCCTTGGCTCTCCTGCCTCCACTTCCTTGCACGTGGGATGGCAAGCATACACCACCATATGATCCTCTTTTCCGATACCCCATAGTTCTGTGACTGTGATCCTTAACATATACTCTTCTACATAGCTTGAAAGAAGTCTTGAAAGGAACAGGGGAGAGGGGCTTCATATTGCATCTCTGCCTTGGAAACTCACAGTGCATTTAATGCTTGAATCCAGAAATCGGGAATCTCCTAATTCACACACCATTTTGCAAACACATTGCACCCTGAAACTCATTTGCCTTTGTCAAGAGCTCCTAACTCACAGAGAGAATGTCACGTGGAATGTGCCTTGAGAAGTGTTGACACTGGAACACAGCCATTCCCAACGAGAAAATTACCCAGCAACTAGCATAGAACGTTCTGTAGAGCTGCCATGTTTTCTATCCTCTCTTGAACTGGAAAGAACCAAACCCTGTCTGTAATTATGCTATTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATACATACATACTCAGTGAATAAGCCTGTTCTCTGTCATTTTAACAAAATGTCTTAGGCTGTGCATTTTAGACATGGGTGTAGTATTTGGAGCACAACATTACAAGCTGACAGTTTAAGATAGGGTATCTTCATTTGTTTGGTCTCTGTGAGGGGACTCCCAGTGATGGCAGGTACAGAGGTAGTTGGGACAGCATGCTGAAAGATGACTCAGGTTCACTTTTCAACATACTCTCAGAAGAGCTGACAATTCATTGCCTGAAATTAGAATCATTAGCTTCATAGAGCAGTATCCCCAGTGATATAACTACCTCTGTCTGACCCCACCTTTTAAAGAGCCCACTGTCTATTACATGGCTAACTGGAGATCCAGCTGCCAACAGGTGAACCTTTGGGAGCAGCCCACACTCCTACTGCAGTACCTTCTCAGGATCAGCTGCATATTTTCTCCTGAGATGTGCACCTCTGAAGATGGTGCACATAATGTTCTAAAATAGTGATTCTAAACCTATGGGCCTCAAACCCTTTGGCACCTCTAACTTTAAAAATATTTATATTATGATTCATAACAGTAGCATAATTACAGTCATAAAGGGACAATGAAGATAACTTTATGGTTGGGGGGGTCATCACAGCATGAGGAATTTTATTAAAGGGTGACAGCGTTAGGAAAGTTGAGAACCACTGCTCTAGAAAGTTCTTTTAACTGTAGTACTTCTGACGCCATTCTAATTTACACATAACCCATCCCAGTAGCTTCCTTTTGGCTGGCTCTTGTCAAGGTAAACACCCTCACTTCTACTTTCCTTGTTATTTTTATGGGGCCTGACGTTCAGATCTCTCACATCTTAGATGGTCCCCTGTGAGCACTGCAGAGTTAGCCAATTTGTGTACTTTAAAGTTAACTTTGCAAGTAAGCCTTGTCTTTATGAGTTGATCTGCGCTGGGACTTTAAAGTCACAACACTTGGTTTTTGAAGTACAGATCTTCATGTGGTTTGATGAAAAGGCTCACATCATTTGATCAGAGACCAAAATATAGTTCACACAGCCATTATTCTAACTAACAACACTTGTGAAGACAGCTGAAGCCCCTTGCCTGCACATATCCTAGCACTGGTATCAGGACAAAATTGCCTGATTCTTCCCAGAGTGATTAAGTTCCTTTTTAAAAGTCTGGAGCCCTCTGACTTGTAGCTTGCAGTGAAACACGTTATCACTATTAAGGATGCTTTGATTCCCTATCAGGTGGCTTCCTCTCTCTCTTTTATACAACATGGCTCTGATCCTTAAACTGTAGACTTGTTTTGTTCATCAAAGGATCTTTGTAGATCAGGCTTCTCAAAACTACACTTTGCTTTCTCTCCCGATAGATCCTTAGTGTAAACTGACTCCCATCAGGATCAACCCCGTAGGTTAGCTTGTTCTCAAGAAGAACAACTGGATTTCTGCATTCCTTTCCTGTGCTTTCTTATTTGCTGTATTTATTTCTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTTACCATATGCATGCCTGCTACCCTGGGAGGCTGGAAGAGGACATTGGACCCCTGAAACTGGAGTTATAGGTGATTTGAGCCATCGTGTGGTTGCTGGGACTCAAAGCCGGGCCCTATAGAACGGCTATCATGTCATCTCTCCTGACCTGTCCTATATAAGATAACGATTAGCCTGATAAGACACCATGACCAAAACCAACTTGAGGCAAAAGCATTTATTTCACTCATGGTTTCATGTTTTCCTATAGAACCCAAAAATACCAATCTAGGAGTAGCCCCACCCCGTGGGCTGGGCCCTCTTACATCAATCACTAATTAGGAATATTCCCTAAAGGCTTCCCTATAGTCTTATGGAATCATTTTCTCAACTGAGGCTTCTCTCCTTTCTGATGACTCTAGCTTGAGACAAGTTAGACATAAAACTAGCCAGGATAGGACTCTTACTATGACTTCTTAAACTAGACAAAGTAGCTCTTTTGCATTGCAATCCACCTATTCAAATGTCTGGGCAATCGTTCCTATCAACAAAGCCACAATATGATAGGGTTTTTTATTTAAATTTATTTATTTATCTATTTATTTATTTATTTTTACTTATTCATATTACATCCCACTTACTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTCTCTTTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTCTCTTTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACAGAATCCTTCCCCTATTCCCCTTCTGGGTAGGATTTTTCATGGCCCTGAAAAGACCTTCAAAAGAGTCAGGGCACATCTGAAAATCAGTCTTTTAGCCCTCTATTCTTTTTCTCAGACAACAGGCTTGGTTTTTCTCCTTTGTGTTTGGTAGATCTTGCCCAAGGAATTTATAAGACTAACATGGTCATGATGTAGCTTTGGCAATGGCCCCTACTGGTTACCTGTTTCCAACATGGATTTTCTAATCTGAATTTTAGAAAGCCTTTCTGGGATACATTACTTCTATAATATTTCTTCCTACATGGAATCTTAATTATCTAGATTTTGACAAGCAAATAATTTACTCTTTGTCCTGTTATGCAAACTAACAATAGAAGCCTCTAAAATGCTTAGAGAATAAATTGTTAATAAAGAGATGAAGAGTTATCTCATCAACTAATTAATTAAATTGTACTAGTCATTATACAATGTGCTAATATTTGTCCTGGAGTAAGGTTTGACAAATAGTAAGGCAGAATCCTTATGAAAGTGTTATAAACAGTTCATTCTACTCTAAATATTGTAATATTGGAAGCAACCATACATACAAACCAGTAAATTAAGGATGGGGAGCTATTAGTGTGTTCTTCAGAAACCAAGTCTTCTCTCTAGATGGACCAACTTCACAAGAGCCATGCTTTATGAGGCTTCTGTAGGTTAGGGAATAAGAACCATTGAAATGGCTGATGGGTAATTGAGGCCACTGGACAGTGAGACACTGTATCCAACATTACCAAAGAAGGCCCTGCCCAGAGAACTCCAGCCATGTCCTCATCTGCTCTTCTAAACACAAGAAGATTCTTACAGTGCTTTAAAGGTGGATGCTCCCGACGTTCTACTTCCCACCACTAATCTATAGGAAATAACAAATGCTTATGAATCCCTGGAGCTGGCAAACCCATGGTAAAAGTCCACCTCCCGGGGAAGTGTCAAGAGAAAGTTACAAAGAGGCACGGATACTTAATTTTCCTGAAGTATGTAGAGAGAGAAAGCAGCCATCTTGGTATCTCCATCATATAGGGTGCCAGATGGGAATACAGAAGACCCTCATCCCTGTGTCTTCTCTCCAG
Seq C2 exon
GATAGTGAAGAGGTGCTGAAGCAGACCCAGAACCTGAACATGTATTGTCACTTTGCAAATGGCATTGGTGAGCCCAAGTACATGCCTGTGCAATCATGGGACCTTCTGAATCAGACTCTGGTGGAAGCCCTGGAGAGCCACAATGAAGTGAATGCTGTGATGGACCTAGTTCTCTTTGAGGATGCCATACGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752:ENSMUST00000080665:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types