MmuINT0050692 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119250730-119251322:-
Coord C1 exon
chr12:119251161-119251322
Coord A exon
chr12:119250924-119251160
Coord C2 exon
chr12:119250730-119250923
Length
237 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTCTGTGCTTCGTTCTGCAGGGT
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGGATTTTATTTGCTTCTCCTGAGTGTTTAAAATCCCTGGAAGACTTAGCACGCCTGTGGCTTCATGAAACGTCACGTGTTTATGGAGACAGACTGATAGACACAAACGATTTTGACTTATTTCAGAGGAAAATGCTGGAAACTGCCCATAAGTACTTTAAA
Seq A exon
GTAAGTGCATAAGTGTGAGAGGTCTCTGTTCTCTGGGCTCCAGCTGGTACACGGCTGGCATTAGAGAGTCTGTGAGCCGCAGATGAGCAAGCATACTGCCATTTTCTGCAGCGTCTGAGATTCACAGACACACTGGGTCCGGATTAAGGGGCAAGGCCCTACTTCCTCATGTGCAGGTCTGCCAGATTGTGATTCTTCAGGTGGCTCTCATACCATGGTCTGTGCTTCGTTCTGCAG
Seq C2 exon
GGTGTAGATGCTAATGCGCTGCTGCGGCAGCCCCTTGTCTATTGTCACTTTGCCAGTGGAGGGGAAGACCCTTGTTACATGCCAGTGAAGGACTGGGAAGGGCTAAAGGCAGTTCTTATGGAGATGGTAGACAACTACAACGAACTCCACTCAGCGATGCACCTGGTGCTATTTGAAGACGCCATGCAACACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:50
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCATGAAACGTCACGT
R:
GTGTTGCATGGCGTCTTCAAA
Band lengths:
297-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: