MmuINT1008737 @ mm10
Intron Retention
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118012257-118012849:-
Coord C1 exon
chr12:118012688-118012849
Coord A exon
chr12:118012451-118012687
Coord C2 exon
chr12:118012257-118012450
Length
237 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTCTGTGCTTCGTTCTGCAGGGT
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGGATTTTATTTGCTTCTCCTGAGTGTTTAAAATCCCTGGAAGACTTAGCACGCCTGTGGCTTCATGAAACGTCACGTGTTTATGGAGACAGACTGATAGACACAAACGATTTTGACTTATTTCAGAGGAAAATGCTGGAAACTGCCCATAAGTACTTTAAA
Seq A exon
GTAAGTGCATAAGTGTGAGAGGTCTCTGTTCTCTGGGCTCCAGCTGGTACACGGCTGGCATTAGAGAGTCTGTGAGCCGCAGATGAGCAAGCATACTGCCATTTTCTGCAGCGTCTGAGATTCACAGACACACTGGGTCCGGATTAAGGGGCAAGGCCCTACTTCCTCATGTGCAGGTCTGCCAGATTGTGATTCTTCAGGTGGCTCTCATACCATGGTCTGTGCTTCGTTCTGCAG
Seq C2 exon
GGTGTAGATGCTAATGCGCTGCTGCGGCAGCCCCTTGTCTATTGTCACTTTGCCAGTGGAGGGGAAGACCCTTGTTACATGCCAGTGAAGGACTGGGAAGGGCTAAAGGCAGTTCTTATGGAGATGGTAGACAACTACAACGAACTCCACTCAGCGATGCACCTGGTGCTATTTGAAGACGCCATGCAACACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581:ENSMUST00000084806:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCATGAAACGTCACGT
R:
GTGTTGCATGGCGTCTTCAAA
Band lengths:
297-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types