RnoINT0048682 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145917446-145918030:-
Coord C1 exon
chr6:145917869-145918030
Coord A exon
chr6:145917640-145917868
Coord C2 exon
chr6:145917446-145917639
Length
229 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTTTGTGCTTCCTTCTGCAGGGT
3' ss Score
11.4
Exon sequences
Seq C1 exon
GGAATTCTGTTTGCCTCTCCTGAGTGTTTAAAATGCCCAGAAGACTTAGCACGCCTGTGGCTTCATGAAACATCACGTGTTTATGGAGACAGACTGGTAGACGCAAACGATTCCGACTTATTTCAGAGGAAAATGCTGGAAGCTGCCCATAAGTACTTCAAA
Seq A exon
GTAAGTGAGTAAGCGAGGGAGAGGTCTCTGTTCACTGGGCTCCAGCCGGTATGAGGCCCGAGGTAGAGAGAGTCTGTAAGCTGCAGATGGGCAAGCGTACTGCCTTTTCCTGCAGCGTCTGAGATTCACAGATGAACTGGGTCTGGATTAAGGGACCTTGTCCTACTTCCTCATGTGCTTGTGACTCTTCAGGCGGCTCTCATACCACGGTTTGTGCTTCCTTCTGCAG
Seq C2 exon
GGTGCAGATGCTAACACGCTGCAGCAGCAGCCCCTCGTCTACTGTCACTTTGCCAGTGGCAGGGAAGACCCTTGTTACGAGCCCGTGAAGGACTGGGAAGGGCTAAAGGCAGTTCTTACAGAGATGATGGGCAACTACAATGAGCTGCACTCCGAGATGCACCTCGTGCTCTTTGAAGACGCCATGCAGCACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(7.1=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGACTTAGCACGCCTG
R:
CGTCTTCAAAGAGCACGAGGT
Band lengths:
307-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]