RnoINT0048820 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107076753-107077469:-
Coord C1 exon
chr10:107077308-107077469
Coord A exon
chr10:107076918-107077307
Coord C2 exon
chr10:107076753-107076917
Length
390 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
AGCATTTTGTCTTGGCCCAGGAC
3' ss Score
5.07
Exon sequences
Seq C1 exon
GGTATCTTGTTCTCCACGTTAGAGATTCTGAGAACCCCGCTGGACATCGTCCGCCTCTGGCTGCACGAGGCTGAGCGGGTGTACGGGGACAAGATGGTGGATGAGAAAGACCAGGAGACGTTGCGCAGGGTCACCATGGCATCCACCAAGAAATTCTTCGAT
Seq A exon
GTGAGTTAAGCTATCAGGTCCCCCTGCTGCACCCGCAGAGGGAAACCTATGTAATGACTCCAGCATGTAGTGGCGGGAGCAGTGAGAGAGAATTGGCCGTGCAGAGGGCGTGACCTCCTGCCCCACCCCCCGCCGCCTGTAGTGGGGCGCAGCTGCCTCAGTCCTTGTCACCTACTGTCACATCCCCAGTGGGATCCCCTATGCGCCCCACATGCGCACCCTACAGGAGGGGAATGTCCCACGAGACGTGAGGGTTGACGCGGTCACGGTTCGGGTCATTAGAGACATGGCCTGGCCTCCTACAAGGCCTTATGGGACCAGCTTAGTAGGTGTGGTGACCACCGGCCTGTGCTCGGTGGCCCAGAGGCCAAGCATTTTGTCTTGGCCCAG
Seq C2 exon
GACCTCGGGGAAGAGCACCTCTTCGCCAAACCCAACATCTTCTGCCACTTTACACAAGGGATCGGGGACCCCAAGTACTTCCCCGTCACGGACGTGGCGCACCTGAACAAGCTTCTCAAAGACGTCCTGGACAGTTACAACGAAGTCAACGCGGTCATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
NA
C2:
PF127802=AAA_8=PU(3.4=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTCCACGTTAGAGATTCTGA
R:
GGTTCATGACCGCGTTGACTT
Band lengths:
318-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]