MmuINT0050817 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69352900-69358058:-
Coord C1 exon
chr11:69357879-69358058
Coord A exon
chr11:69353067-69357878
Coord C2 exon
chr11:69352900-69353066
Length
4812 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCTGCCTCCATCTTCGCAGTGC
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTTGCCTTCAAGATGGCTAGCAAAGCCGAGAAGAAGCGAAAAGTGGCTGGCCGGGGAGGCGCCCGGGCAGGCCGAGTTGTCCGAGCTCCTCAGTCCACTGCAGGCCCAGGAGCTACAGAGGCTTCCCTGCTCCCTGATGGTCAGGAGCCAGAGCCCGAGTCTGGCAAGGAGGACTCTG
Seq A exon
GTGAGTACTTGCTGGGACGGAGGGGACTTAGAAATGGACCGTGGGCAGAAGTAGAGAGGCTTTTGAGAGCTTTTTTTTTTTTTTTTCCTGAGACAGGGTCTCTCTGTGTAGCTCTGGGTGGTCTCAAACTGGCTAGGTACAGCAGGCGGGCCTGGCATTCATCAGGGATCTGCCTCCCTTTGCCTCACAAGCCCTGGGATTAAAGGGGGCACCACCATGCCCAACTCAGGAGTATCTTGGGGCTAGGGCGCAGGACCACGAAGCAGGACAGATGTGATAGTGTATCTAAGGCTTCCACAGAGCCTCCATCCTTCTCTTTTCTTTCCTCTTGATATGTGCACGTGCCTTCTTCCTGGTCAGCCCGCTATTTATTCTGTTTTTTAAAATCTCCCATCAGTGTACCAGGAATTCACCAGCCAGTTCTTTCTCTAGCCTCTTCCTTATTTCAAGTGTTTCTGGTTGTTCCCACCCCACTGTAGAGGGTTTGATCTCTTCCTTTTTCCTATTTTCACCCTGGGTGGCAAAACAAATAGTGTTTTTCTTCCATTAAGCCCATCACCATGGAGACCCAGCCTGCTTCGCCACCCTTTGATTCCTAAGCCCGGCTGATGCGTTCCACCATCTGTTGAAAGCTCCTGTGTTTTCTTCCTCAGCTTGGCAGAGACTTGGTAGATTGTGGAGGTTCAGGTTCAGGGTGACAGGAAAAGAAGCCTACATGGAGGGAACAAAGAGCTGCCTCTTGTGGAGTTGATCCTGGAGCCAGAGTGGTTGGAGGGGTTGGGGTCTTGGTTGCTGTCGGTTGCTTTCCCTTTAGATCCTGTCCAACGGCCTGAGGCTGTGAGCCAGGTGTAGACCTCACCTTTTAAAACGCGGGGCTTGTTGGTATTGCTAGTGTCCTGTAAGGATGAAGAGAAATAGAATCTTCTCCTGTTGACTTCTAAAATTTTATTTAATAAGTATTTTATTATTACTACTACTATTTTATTATATGTATAGTTGTTTTGCCTGAATGTTGGTCCGAGCACCCCATGCCATATATCTGGTGGAGGCCAGAACATCAGATTCCCCTGGGGCTCCAGTGTAGATGGTGAGCCCCCACTTGGCTGCTGAAATCAAACCTAGGTTCTCTGGAAGAGAAAGCAGTGCTCTTAACCATGAAATAATCTCTCCAGCCCCTAATTATTTAATTATCTTGTGGAGGGATGGGTGAGCCTGCTCATATCATGGTGCATATGTAGAGGTTGGAGGACAGCTTGTGGGAGTTGGTTCTTTCCTCTTAGCCCATGGGGTCCAGGGATCACACTCATGTGGTTGGGCTTGGTGATGAGTACCCTTATGTGCTCATCCATCCCCGTGTCTCTTTTTTCCTTTAGTGTTGAGGGCTCAACCCAAGGCCTCATGCATGTTAGGCGAGCGCTCTCCCACGGAGCTGTGTCCCCAGAGAGAATCCACTGTAATGGGATAGTGGGAATAGGCTTAGGGCTGTAGGTGTGCTAGCCACACACACACACACACACACACACACACACACACACACACACACACACACTCACTCACTCACTCACTCACACTGAGATGGAGTTTTCTTATATGTCCCAGGAGGGCTTTGAACTCTGGCTCTTGCTTTGAATTTTTGACCTTTCGTTTTCAGTCTCCCGAGTTGTGGGAGTGTAGACCTGCGCCTTTCCTGGCTCCTTACTGATGTTGCCCGTAAGGGTTAGGAGATGAAGTGCAGGTCTAGGGAAAGGCCCATGAACTCAGTCTAGGATCTATGTATAGCCTTTTAGAAACATGCAATATTATCATCTCTGATGTCTCATGTGCTCAGTTCAAAACAGTTTAAAATTGACTAGCTCCAAGAAGCCTGGTACCAGGAGCTAGGGCAGACAGCAGGGAAGGTGTTGTTTGGAGAACCTTCTGAGAAACAAAGAGAAAATGTTTCAAAATGGATGCACCAGTCTTCCTATACCACAGAAAACCGGTCCGTGTCCCCCCCCCCCCCCCCCCCCCCCGTCCTCTCCCCAGACAGGGTTTCTCTATGTAGTCCTGACTATCCTTGAACTTTCTCTGAACTATAGATCAGGCTGGCCTTGAACTCACAGAAATCTACCTGCTTCTGCCTCCAGAGTGCTGGAATTAAAGGGGTGTGTCACCACCCCTGGCTTTTTTTTTTTAAAGATTTATTTATTTTATGTATATGAATACACTGTAGCTATACAGATGGTTGTGAACCATGTGTGGTTGCTGGGAATTGAACTCAGGACTTCTGCTTGCTTTGGTCCCACTTGCTCCTGCCCCAAGATTTGTTATTTATTTATGTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATCATAGATGAGACACACCAAAAAAGGGCATCAGATCTCATTACGGATAGTTGTGAGCTACCATGTGGCTGCTGGGATTTTTGAACTCAGGACCTTTGGTAGAGCAATCAGTGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACATTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGCAATCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCACCCCGCCCCCTTTTTTTACTTGTTTGTTTTGAAACAGGGTCTCTCTCTATGTAGTCTTTCCTGTCCTGGAGCTTGCTATGTAGACCAGGCTGGCCTGAACTCACGGAAATATTCCTGCTGGGATTAAAGGCTTATGATGTCATGCCTGGCCCTAAAAAACTCTTACTGGTCAAAAAAATACTTATTTGTAAAGGCTTTTTAAATTGTGGGTGTGTGGAGAGTGTGGATTTGTACACATGAGTGTGCTGTCACAGGAAGCCAGACTGTTGTTATTCTCTGGAGTTGAAGTTACAGGGTTTGTAAGCCGTTTGGTGTGGGAGCTAGGAAATGGGGACTTGGGTTCTTTGCAAGAGCAGTGCATTCTCTTAACCAAGGAGTTAACTCTCTAGATCCTCCTACATTACAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTCTGTGTGTGTCTGTCTGTGTGTCTGTGTGTAGAGAGAGAGAGAGAGATGGCTCAGCTATTAAGAGCACTGACTGTTCTTCCAGAGGACTTGGGTTTGATTCCCAGCACCCAGATGGTGGCTCACATTTGCCGGTAACTCCAGTTCAAGAGATCTGATGCTGTCTTTTGTTTTCCATAGGCACCAGGTACACAGACATACACGCAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCACACATTAAATGAAAGCTTAAAAATGAAATTTTATTTTTCATGTCACTGGGAGGTGAACCCTGGGCTTTAAGCATCCATCCATCCTTTGAGCCACACACAGAGCCCTCATGTCTTTTGCCTTACATTTCATTCAATTACTATTTAAAATAATTATAATCAGGTCTACAGTTCCTTTTCTGTGTTTCTCAAAAACTCTAGCTGGGGCGTGGTGGCTCGGGCTTTTGATCCTAGCACTTGGGAAGCAGAGATAGGAGGATTTCTGTGAGTTTGAGGTCAGCCTGATCCACAAGTTGAGTCCAGGACAGCTCCAGGGCTCCTTATACTGAGATAGCCTGTCTCAATCCCGCCCTCCCCCACCCCTCAACCAACCAACCGACCAAACAAACAAAAACCCCCCAAACTCTAACAAGGGGCAAGGAAGGTGGCTAAGAGGTTAAAGGTATCTGTCTTCAAGTGTGACCGCCTGAGTTCCATACTTAGGACGCACACGGGAGACAGCAAGAAGTTACTCCTACAAGCTGTTCTCTGACAGCCACACATACACGGTGGCACCTCTGTGCCCGCTCCCACCCCGACACAAATCACGTATTCAAAAAGATCCTGAAACCTCGAGCTTGCAAGTTTCCACCCCAATAAAGTCTGGCGTATAAACTTATTTGGTGGTGAAACCTAACCTAAGCTGACACAAAGGTATTTATGATCTGTTCAAGCCACTTACTATAAATATTCATATATTTTACTGTAGGAATACAGTAATAAAAGTCTGGTTGTTAAATATTGTTCTAGAGCTTTCTGGAATGGGAGCCAGGGATTTCATTCCAAACTTTTGTTACATTGCTTTTTTTTTTTGAGACTGGATCTCATATAAGCCAACATGGTCTTCAACCTCCTGTGTAGCCAAAGTTGACCTTTGTCTTAGGCAGGGTTTCTATTGCTGCAATGAGACACCATGCCCATATAGCAAGTTGAAGAGGAAAAGGTTTATTTGACTTACACTTCCACAGTCTTGTTCATCAATGAAGAAAGTCAGGATAGGAACTCAAATAGGGCGGGATCCTAGGGGCAGGAGCTGATATGATACAGAGGCCATGGAGGGCTGATGCGCTTCATATGGCTTGTTCAGCTTTCTTAAAGAACCAAGGACCATCAGCCTAGGAATGGCACTACCACAATGGGCTGTGCTCTCCCCCATTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCATGAAGGCATTTCCTCAACTGAGGCTCCTTCCTTGTTGATGACTCTAGCCTGCAGTCAGACCCAGCCAGTACAACCCTCAGCTTCTGACCCCCTGCCTCCATCTTCGCAG
Seq C2 exon
TGCTGGGATTACAGGCATTTGCCAGCTGGAGATTGACCCCAGCGCTTCATGGAGAGGCTAACACTCCACCAACTCTGCTGCATCCCCAGCCCCTGTTTCACAGACGTCTTACAACTTTGAATCTTATTCTGTCCTGTTCTAGAGCTGGAACTCGGGATCTTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.232
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: