HsaINT0049590 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7623039-7627007:+
Coord C1 exon
chr17:7623039-7623218
Coord A exon
chr17:7623219-7626945
Coord C2 exon
chr17:7626946-7627007
Length
3727 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TGTATGTTTATTCTTCCTAGAGC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTTTTGCCTGCACGATGTCCAGCAAAGCTGAGAAGAAGCAGCGATTGAGTGGCCGAGGAAGCTCCCAGGCAAGCTGGTCAGGGCGGGCCACTCGGGCTGCTGTGGCCACACAGGAGCAGGGGAATGCCCCGGCTGTCAGTGAGCCAGAGCTGCAGGCTGAGCTCCCCAAGGAGGAGCCTG
Seq A exon
GTGGGTACTTGCTGGGGCAGAGGATGCTTAGCAATGGAGGGTGGGGAAAGTCAGAGGGGCTTGGAGGCATTTTAGGGCTGGGGAGCAGGCGCTGTTGCTTCTGGGCAGGAAACGGGCTAAGTGACGCCCCCAGCCATGGAGGTTCAGCAGCCCTGCCACTGAGTCCTTTTTTTGTATGTCTTCCTCCTGGCCAGCCTCATCCTTGTTCTTTCTGTCTTAAAATTTCCCACAATATACCAGGAGTTCACCAACCAGTCCTTTCTCTAGCCTCTTCCTCCTTATTTCAAGTGTTCCTGGTTGCTCCTACCCCACTGAAGAGGGTTTGATCTCTTCCTTTTTCCCATTTTCACCCTGGGTGGCAAAACAAATAATGTTTTTCTCCCATTAAGCCCATCACCATGGAGACTCAGCCTGTTTTGCCACCCTTTGAATCCAAAGCCCGGCTGATGCTTTCTACCATCTGTTGAGGGCTGTTCTATCTCCGCCCTCATTTTGGCAGGGACTTGGTAGACTGCGGAGGTTCAGGTTCAGGATGACAGGAAAGAAGTCTAGATCTAGGGAGGAAAGAGTTTAACGAGGCAGCCTCTTGTGGCTTTGACCTGAGGGATTCCTTTCCTGTGGGTGAGCCGGAGCCAGTAAGGTTGGAAGGTTTTTGGTAGTTGTTGCTATTGCTGGGATCTCCCTGAGAGCACTGGTCAGTGTAGACAGGACTATGAGCTAAGTGTAGACCTCCTTCTTTACCTGGAGCTCCTTTACACTGATAGTAGCTTGTGAAATAGAATCCCCTTCTAAAATTAAAGGTTGAGAGGTTAAGCGTGGGCATGGGAGAAAAGTCCCTGGGCCATAAGAACTTGCATTAGGTTCCAGGATCTTAGAAATGTGCAGAATGTATCCTTCTGAGTTCTGAAGTGCTCAGGTGAAAGCAGTTAAAATGGGATTGCTCGCTGCTAGGAGGAGTAGGGGAAGATGGGAGGGAAGACAGTGAGGTTCAGTATGGAGAATCCTCTGGGGAGGTAAGGGAAGGAGCTTTAAAATGAATGTGTTGGCCTTCGAACAGCAAGGATTTCTGCCTCTCCCAGCTCCAAGCTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAAATTCTCACTCTGTCTCCCAGCCTGGAGTGCATTGGCATAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGCTCAAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATACACCACCATGCCCAGCTTATTTTTTTTATTTTTTTGAGACAGAGTCTCTCTCAGTTGCCAAGGCTAGAGTGCAGTGGTGCGATCTCAGTTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGCCCAGGCTGGTCTCGAACTCCTGTCCTCGAGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGTCTCCCCTGGCCTAGTTCTTGCCTGGAACCTGAATGCCAGCAGTTTTCCCAAGGGAGTTGGATCATCTCACCTACTCACCTACTACTAAGCTCCGGAATCGCCTGTTCCATCTTTTCACGCCTTCCTGCCTCGGCCTCTGTGCCTCATTCCCCTCTTAGTTTTCCTTTCTGGAAGCCAGAGGGAGTTTCCTGTTCCTCATGGTCTTTTGGTTATATCTCATTTGTTCCTTCCTCCTTTCAGCCCCTGGGGAATGGGAAAGCCACCAGTTTTACTCCAATCTCCTGTGTGACTAGTAGATCAGGAGGCAGAGAAACAGAGCCGCTGGGTTTTATGGGAGTCAGAGTGGGTGTGGCAGAACTGAATGCTCAGCAGGCCAGTGGTTTGGAGAAGGGCTGATTCCTATGAGCCCCAACTTCTCCATGTGGGAAGAGGAGTGGGGGAAGATGGAGGGCCAGAAGCTGTATGCCTGGAATAACCTCAGTACTAACCGCCTTCATTCCCTCACCCCTACCCCAGTTAGTGTTTGTTTTATTTTTATTTTTTGGAGACAGAATCTTGCCCTGTCACCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCGACCTCTGCCTCCCGGATTCAAGCAATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATTACAGGCACCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTATAGAGACGGGGGGGGGGGTTCACCATCTTGGCCAGGCTGGTCTCGAACGCCTGACTTCGGGCGATCCACCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCATCGTGCCCGGCCCCCAGTCAGCTTTTTACATTAAATTGACAGAGAATTCACTGACTCTAAAATTTACCTTTTTAAAGTCTACAGTTCAGTGGTTTTTGGTATATTCACAAAGCTGTGCAACGTTCCCACTATCTAATTTTAGAACATTTTTATCCCGCCAAAAGAAAGCCACTTTAAGCACCTTGAGAAATTGGCACCAGGTGACTCCTATATCTTTACTTGTAAGTTGCATCAGAGCCTCGTCTTTTAGCAGTCACTCCTGATTCCCCCTTCCCCCGCAGATCCCAGGAACCGCTCATCTATTTTCTGTCTTTATGGATTTGCCTATGCTGGACATTTCATCGAGTGGTCTCTCATGACTGGCTTTTTTCACTTGGCACTGTGTTTTCGAGGATCATCCATGTTGTAGCATGAACCACACCGCCATGCCTTCTGATGGCTGAATAATAGCCCACTGCATGTTTATATCACCTTTTGTTTATCCATTCCTCTGTTAGAAGACACTGAGCTGTTGCCACCTTTTGCCTATTGTGAATAATGCTGCTACGAATGCTGTAATGCAAATCTCTCTTTGAGTCCTTGCTTTCAAGGTCTCTACCTAGAAGTGGAATTGCTGGGTCATTGGGTGGCTGTGTTTAGCTTTCTTTCTTTTCTTTCTTTTCTTTTCTTTCCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTACAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGCTCCCACCAGCACATCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCGTATTAGTCAGGATGGTCTTGATCTCCTGACCTCATGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTACCCGGCTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCACTCAGGCTGGAGGGCAGTGGCACGATTATGGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGACACCCGCCACCACACCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCACTATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCTCCCGCCTAGTACTCCCAAAGTGCTAGGACTACAGGTGTGAGCCACCGCGCCCAGCTGACTGTGTTTAACTTTCCAAGAAATGCCTTCCTTTTTGTATGTTTATTCTTCCTAG
Seq C2 exon
AGCCACGGTTGGAGGGACCTCAAGCACAGAGTGAAGAATCAGTGGAGCCCGAGGCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)