MmuINT1008804 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69539398-69544556:-
Coord C1 exon
chr11:69544377-69544556
Coord A exon
chr11:69539565-69544376
Coord C2 exon
chr11:69539398-69539564
Length
4812 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCTGCCTCCATCTTCGCAGTGC
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTTGCCTTCAAGATGGCTAGCAAAGCCGAGAAGAAGCGAAAAGTGGCTGGCCGGGGAGGCGCCCGGGCAGGCCGAGTTGTCCGAGCTCCTCAGTCCACTGCAGGCCCAGGAGCTACAGAGGCTTCCCTGCTCCCTGATGGTCAGGAGCCAGAGCCCGAGTCTGGCAAGGAGGACTCTG
Seq A exon
GTGAGTACTTGCTGGGACGGAGGGGACTTAGAAATGGACCGTGGGCAGAAGTAGAGAGGCTTTTGAGAGCTTTTTTTTTTTTTTTTCCTGAGACAGGGTCTCTCTGTGTAGCTCTGGGTGGTCTCAAACTGGCTAGGTACAGCAGGCGGGCCTGGCATTCATCAGGGATCTGCCTCCCTTTGCCTCACAAGCCCTGGGATTAAAGGGGGCACCACCATGCCCAACTCAGGAGTATCTTGGGGCTAGGGCGCAGGACCACGAAGCAGGACAGATGTGATAGTGTATCTAAGGCTTCCACAGAGCCTCCATCCTTCTCTTTTCTTTCCTCTTGATATGTGCACGTGCCTTCTTCCTGGTCAGCCCGCTATTTATTCTGTTTTTTAAAATCTCCCATCAGTGTACCAGGAATTCACCAGCCAGTTCTTTCTCTAGCCTCTTCCTTATTTCAAGTGTTTCTGGTTGTTCCCACCCCACTGTAGAGGGTTTGATCTCTTCCTTTTTCCTATTTTCACCCTGGGTGGCAAAACAAATAGTGTTTTTCTTCCATTAAGCCCATCACCATGGAGACCCAGCCTGCTTCGCCACCCTTTGATTCCTAAGCCCGGCTGATGCGTTCCACCATCTGTTGAAAGCTCCTGTGTTTTCTTCCTCAGCTTGGCAGAGACTTGGTAGATTGTGGAGGTTCAGGTTCAGGGTGACAGGAAAAGAAGCCTACATGGAGGGAACAAAGAGCTGCCTCTTGTGGAGTTGATCCTGGAGCCAGAGTGGTTGGAGGGGTTGGGGTCTTGGTTGCTGTCGGTTGCTTTCCCTTTAGATCCTGTCCAACGGCCTGAGGCTGTGAGCCAGGTGTAGACCTCACCTTTTAAAACGCGGGGCTTGTTGGTATTGCTAGTGTCCTGTAAGGATGAAGAGAAATAGAATCTTCTCCTGTTGACTTCTAAAATTTTATTTAATAAGTATTTTATTATTACTACTACTATTTTATTATATGTATAGTTGTTTTGCCTGAATGTTGGTCCGAGCACCCCATGCCATATATCTGGTGGAGGCCAGAACATCAGATTCCCCTGGGGCTCCAGTGTAGATGGTGAGCCCCCACTTGGCTGCTGAAATCAAACCTAGGTTCTCTGGAAGAGAAAGCAGTGCTCTTAACCATGAAATAATCTCTCCAGCCCCTAATTATTTAATTATCTTGTGGAGGGATGGGTGAGCCTGCTCATATCATGGTGCATATGTAGAGGTTGGAGGACAGCTTGTGGGAGTTGGTTCTTTCCTCTTAGCCCATGGGGTCCAGGGATCACACTCATGTGGTTGGGCTTGGTGATGAGTACCCTTATGTGCTCATCCATCCCCGTGTCTCTTTTTTCCTTTAGTGTTGAGGGCTCAACCCAAGGCCTCATGCATGTTAGGCGAGCGCTCTCCCACGGAGCTGTGTCCCCAGAGAGAATCCACTGTAATGGGATAGTGGGAATAGGCTTAGGGCTGTAGGTGTGCTAGCCACACACACACACACACACACACACACACACACACACACACACACACACACTCACTCACTCACTCACTCACACTGAGATGGAGTTTTCTTATATGTCCCAGGAGGGCTTTGAACTCTGGCTCTTGCTTTGAATTTTTGACCTTTCGTTTTCAGTCTCCCGAGTTGTGGGAGTGTAGACCTGCGCCTTTCCTGGCTCCTTACTGATGTTGCCCGTAAGGGTTAGGAGATGAAGTGCAGGTCTAGGGAAAGGCCCATGAACTCAGTCTAGGATCTATGTATAGCCTTTTAGAAACATGCAATATTATCATCTCTGATGTCTCATGTGCTCAGTTCAAAACAGTTTAAAATTGACTAGCTCCAAGAAGCCTGGTACCAGGAGCTAGGGCAGACAGCAGGGAAGGTGTTGTTTGGAGAACCTTCTGAGAAACAAAGAGAAAATGTTTCAAAATGGATGCACCAGTCTTCCTATACCACAGAAAACCGGTCCGTGTCCCCCCCCCCCCCCCCCCCCCCCGTCCTCTCCCCAGACAGGGTTTCTCTATGTAGTCCTGACTATCCTTGAACTTTCTCTGAACTATAGATCAGGCTGGCCTTGAACTCACAGAAATCTACCTGCTTCTGCCTCCAGAGTGCTGGAATTAAAGGGGTGTGTCACCACCCCTGGCTTTTTTTTTTTAAAGATTTATTTATTTTATGTATATGAATACACTGTAGCTATACAGATGGTTGTGAACCATGTGTGGTTGCTGGGAATTGAACTCAGGACTTCTGCTTGCTTTGGTCCCACTTGCTCCTGCCCCAAGATTTGTTATTTATTTATGTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATCATAGATGAGACACACCAAAAAAGGGCATCAGATCTCATTACGGATAGTTGTGAGCTACCATGTGGCTGCTGGGATTTTTGAACTCAGGACCTTTGGTAGAGCAATCAGTGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACATTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGCAATCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCACCCCGCCCCCTTTTTTTACTTGTTTGTTTTGAAACAGGGTCTCTCTCTATGTAGTCTTTCCTGTCCTGGAGCTTGCTATGTAGACCAGGCTGGCCTGAACTCACGGAAATATTCCTGCTGGGATTAAAGGCTTATGATGTCATGCCTGGCCCTAAAAAACTCTTACTGGTCAAAAAAATACTTATTTGTAAAGGCTTTTTAAATTGTGGGTGTGTGGAGAGTGTGGATTTGTACACATGAGTGTGCTGTCACAGGAAGCCAGACTGTTGTTATTCTCTGGAGTTGAAGTTACAGGGTTTGTAAGCCGTTTGGTGTGGGAGCTAGGAAATGGGGACTTGGGTTCTTTGCAAGAGCAGTGCATTCTCTTAACCAAGGAGTTAACTCTCTAGATCCTCCTACATTACAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTCTGTGTGTGTCTGTCTGTGTGTCTGTGTGTAGAGAGAGAGAGAGAGATGGCTCAGCTATTAAGAGCACTGACTGTTCTTCCAGAGGACTTGGGTTTGATTCCCAGCACCCAGATGGTGGCTCACATTTGCCGGTAACTCCAGTTCAAGAGATCTGATGCTGTCTTTTGTTTTCCATAGGCACCAGGTACACAGACATACACGCAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCACACATTAAATGAAAGCTTAAAAATGAAATTTTATTTTTCATGTCACTGGGAGGTGAACCCTGGGCTTTAAGCATCCATCCATCCTTTGAGCCACACACAGAGCCCTCATGTCTTTTGCCTTACATTTCATTCAATTACTATTTAAAATAATTATAATCAGGTCTACAGTTCCTTTTCTGTGTTTCTCAAAAACTCTAGCTGGGGCGTGGTGGCTCGGGCTTTTGATCCTAGCACTTGGGAAGCAGAGATAGGAGGATTTCTGTGAGTTTGAGGTCAGCCTGATCCACAAGTTGAGTCCAGGACAGCTCCAGGGCTCCTTATACTGAGATAGCCTGTCTCAATCCCGCCCTCCCCCACCCCTCAACCAACCAACCGACCAAACAAACAAAAACCCCCCAAACTCTAACAAGGGGCAAGGAAGGTGGCTAAGAGGTTAAAGGTATCTGTCTTCAAGTGTGACCGCCTGAGTTCCATACTTAGGACGCACACGGGAGACAGCAAGAAGTTACTCCTACAAGCTGTTCTCTGACAGCCACACATACACGGTGGCACCTCTGTGCCCGCTCCCACCCCGACACAAATCACGTATTCAAAAAGATCCTGAAACCTCGAGCTTGCAAGTTTCCACCCCAATAAAGTCTGGCGTATAAACTTATTTGGTGGTGAAACCTAACCTAAGCTGACACAAAGGTATTTATGATCTGTTCAAGCCACTTACTATAAATATTCATATATTTTACTGTAGGAATACAGTAATAAAAGTCTGGTTGTTAAATATTGTTCTAGAGCTTTCTGGAATGGGAGCCAGGGATTTCATTCCAAACTTTTGTTACATTGCTTTTTTTTTTTGAGACTGGATCTCATATAAGCCAACATGGTCTTCAACCTCCTGTGTAGCCAAAGTTGACCTTTGTCTTAGGCAGGGTTTCTATTGCTGCAATGAGACACCATGCCCATATAGCAAGTTGAAGAGGAAAAGGTTTATTTGACTTACACTTCCACAGTCTTGTTCATCAATGAAGAAAGTCAGGATAGGAACTCAAATAGGGCGGGATCCTAGGGGCAGGAGCTGATATGATACAGAGGCCATGGAGGGCTGATGCGCTTCATATGGCTTGTTCAGCTTTCTTAAAGAACCAAGGACCATCAGCCTAGGAATGGCACTACCACAATGGGCTGTGCTCTCCCCCATTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCATGAAGGCATTTCCTCAACTGAGGCTCCTTCCTTGTTGATGACTCTAGCCTGCAGTCAGACCCAGCCAGTACAACCCTCAGCTTCTGACCCCCTGCCTCCATCTTCGCAG
Seq C2 exon
TGCTGGGATTACAGGCATTTGCCAGCTGGAGATTGACCCCAGCGCTTCATGGAGAGGCTAACACTCCACCAACTCTGCTGCATCCCCAGCCCCTGTTTCACAGACGTCTTACAACTTTGAATCTTATTCTGTCCTGTTCTAGAGCTGGAACTCGGGATCTTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.232
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types