HsaINT1011424 @ hg38
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein axonemal heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr17:7719721-7723689:+
Coord C1 exon
chr17:7719721-7719900
Coord A exon
chr17:7719901-7723627
Coord C2 exon
chr17:7723628-7723689
Length
3727 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TGTATGTTTATTCTTCCTAGAGC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTTTTGCCTGCACGATGTCCAGCAAAGCTGAGAAGAAGCAGCGATTGAGTGGCCGAGGAAGCTCCCAGGCAAGCTGGTCAGGGCGGGCCACTCGGGCTGCTGTGGCCACACAGGAGCAGGGGAATGCCCCGGCTGTCAGTGAGCCAGAGCTGCAGGCTGAGCTCCCCAAGGAGGAGCCTG
Seq A exon
GTGGGTACTTGCTGGGGCAGAGGATGCTTAGCAATGGAGGGTGGGGAAAGTCAGAGGGGCTTGGAGGCATTTTAGGGCTGGGGAGCAGGCGCTGTTGCTTCTGGGCAGGAAACGGGCTAAGTGACGCCCCCAGCCATGGAGGTTCAGCAGCCCTGCCACTGAGTCCTTTTTTTGTATGTCTTCCTCCTGGCCAGCCTCATCCTTGTTCTTTCTGTCTTAAAATTTCCCACAATATACCAGGAGTTCACCAACCAGTCCTTTCTCTAGCCTCTTCCTCCTTATTTCAAGTGTTCCTGGTTGCTCCTACCCCACTGAAGAGGGTTTGATCTCTTCCTTTTTCCCATTTTCACCCTGGGTGGCAAAACAAATAATGTTTTTCTCCCATTAAGCCCATCACCATGGAGACTCAGCCTGTTTTGCCACCCTTTGAATCCAAAGCCCGGCTGATGCTTTCTACCATCTGTTGAGGGCTGTTCTATCTCCGCCCTCATTTTGGCAGGGACTTGGTAGACTGCGGAGGTTCAGGTTCAGGATGACAGGAAAGAAGTCTAGATCTAGGGAGGAAAGAGTTTAACGAGGCAGCCTCTTGTGGCTTTGACCTGAGGGATTCCTTTCCTGTGGGTGAGCCGGAGCCAGTAAGGTTGGAAGGTTTTTGGTAGTTGTTGCTATTGCTGGGATCTCCCTGAGAGCACTGGTCAGTGTAGACAGGACTATGAGCTAAGTGTAGACCTCCTTCTTTACCTGGAGCTCCTTTACACTGATAGTAGCTTGTGAAATAGAATCCCCTTCTAAAATTAAAGGTTGAGAGGTTAAGCGTGGGCATGGGAGAAAAGTCCCTGGGCCATAAGAACTTGCATTAGGTTCCAGGATCTTAGAAATGTGCAGAATGTATCCTTCTGAGTTCTGAAGTGCTCAGGTGAAAGCAGTTAAAATGGGATTGCTCGCTGCTAGGAGGAGTAGGGGAAGATGGGAGGGAAGACAGTGAGGTTCAGTATGGAGAATCCTCTGGGGAGGTAAGGGAAGGAGCTTTAAAATGAATGTGTTGGCCTTCGAACAGCAAGGATTTCTGCCTCTCCCAGCTCCAAGCTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAAATTCTCACTCTGTCTCCCAGCCTGGAGTGCATTGGCATAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGCTCAAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATACACCACCATGCCCAGCTTATTTTTTTTATTTTTTTGAGACAGAGTCTCTCTCAGTTGCCAAGGCTAGAGTGCAGTGGTGCGATCTCAGTTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGCCCAGGCTGGTCTCGAACTCCTGTCCTCGAGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGTCTCCCCTGGCCTAGTTCTTGCCTGGAACCTGAATGCCAGCAGTTTTCCCAAGGGAGTTGGATCATCTCACCTACTCACCTACTACTAAGCTCCGGAATCGCCTGTTCCATCTTTTCACGCCTTCCTGCCTCGGCCTCTGTGCCTCATTCCCCTCTTAGTTTTCCTTTCTGGAAGCCAGAGGGAGTTTCCTGTTCCTCATGGTCTTTTGGTTATATCTCATTTGTTCCTTCCTCCTTTCAGCCCCTGGGGAATGGGAAAGCCACCAGTTTTACTCCAATCTCCTGTGTGACTAGTAGATCAGGAGGCAGAGAAACAGAGCCGCTGGGTTTTATGGGAGTCAGAGTGGGTGTGGCAGAACTGAATGCTCAGCAGGCCAGTGGTTTGGAGAAGGGCTGATTCCTATGAGCCCCAACTTCTCCATGTGGGAAGAGGAGTGGGGGAAGATGGAGGGCCAGAAGCTGTATGCCTGGAATAACCTCAGTACTAACCGCCTTCATTCCCTCACCCCTACCCCAGTTAGTGTTTGTTTTATTTTTATTTTTTGGAGACAGAATCTTGCCCTGTCACCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCGACCTCTGCCTCCCGGATTCAAGCAATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATTACAGGCACCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTATAGAGACGGGGGGGGGGGTTCACCATCTTGGCCAGGCTGGTCTCGAACGCCTGACTTCGGGCGATCCACCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCATCGTGCCCGGCCCCCAGTCAGCTTTTTACATTAAATTGACAGAGAATTCACTGACTCTAAAATTTACCTTTTTAAAGTCTACAGTTCAGTGGTTTTTGGTATATTCACAAAGCTGTGCAACGTTCCCACTATCTAATTTTAGAACATTTTTATCCCGCCAAAAGAAAGCCACTTTAAGCACCTTGAGAAATTGGCACCAGGTGACTCCTATATCTTTACTTGTAAGTTGCATCAGAGCCTCGTCTTTTAGCAGTCACTCCTGATTCCCCCTTCCCCCGCAGATCCCAGGAACCGCTCATCTATTTTCTGTCTTTATGGATTTGCCTATGCTGGACATTTCATCGAGTGGTCTCTCATGACTGGCTTTTTTCACTTGGCACTGTGTTTTCGAGGATCATCCATGTTGTAGCATGAACCACACCGCCATGCCTTCTGATGGCTGAATAATAGCCCACTGCATGTTTATATCACCTTTTGTTTATCCATTCCTCTGTTAGAAGACACTGAGCTGTTGCCACCTTTTGCCTATTGTGAATAATGCTGCTACGAATGCTGTAATGCAAATCTCTCTTTGAGTCCTTGCTTTCAAGGTCTCTACCTAGAAGTGGAATTGCTGGGTCATTGGGTGGCTGTGTTTAGCTTTCTTTCTTTTCTTTCTTTTCTTTTCTTTCCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTACAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGCTCCCACCAGCACATCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCGTATTAGTCAGGATGGTCTTGATCTCCTGACCTCATGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTACCCGGCTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCACTCAGGCTGGAGGGCAGTGGCACGATTATGGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGACACCCGCCACCACACCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCACTATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCTCCCGCCTAGTACTCCCAAAGTGCTAGGACTACAGGTGTGAGCCACCGCGCCCAGCTGACTGTGTTTAACTTTCCAAGAAATGCCTTCCTTTTTGTATGTTTATTCTTCCTAG
Seq C2 exon
AGCCACGGTTGGAGGGACCTCAAGCACAGAGTGAAGAATCAGTGGAGCCCGAGGCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914:ENST00000572933:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains