BtaINT0050401 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28027092-28031967:+
Coord C1 exon
chr19:28027092-28027248
Coord A exon
chr19:28027249-28031905
Coord C2 exon
chr19:28031906-28031967
Length
4657 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
TTTTTGAATTTTTTCCCCAGAGC
3' ss Score
9.62
Exon sequences
Seq C1 exon
ATGTCCAGCAAAGCTGACAAAAAGCGGAAAGTGACTAGCCGGGGAAGTGCCCGCCGGCGAGCTGCCCAGTCTACTCTGGATGCACAGGTCGAGGAGATCACCTTGCCGGCCAGCAGCGAGGTCCAGGCGGAGCCGGAGACCGTCAAGGAGGAGCCTG
Seq A exon
GTGGGTACTTGCTGGAGAGAGACGTGGAGGTAGAATGTTTGTATTTGAAGAGAGTTTTAGGGCCAGGGAGCAGGTTCTGTTTCTTCTGGGTAAGAAGAAAGGAGTTTAGCTGAATTTCAGGCCACTGCTAGGTCCCTTGTTTGGGGTTTTCCCTCCTGGCCAGCCTTATACTTGTTCTTTCAGTCTTAAAATTTCTCCCCAGTGCACCCAGAGCTCACCAACAAATCTTCTAGCCTCTTCCTTCTTATTTCAAGTGTTCCTGGTTGCTTCTACGCCAGTGAAGAGGGTTTGATCTCTTCCTTTTTCACCCTGGGTGGCAAAACAAATAGTGGTTTCCTCTCATTAAGCCCATCACCATGGAGACTCAGCCTGCCTTGCCATCCTTTGAATCCTAAGCCCGACTGAATCTTTCTCCCATCTGTTTAAGGTTGTTGTGTCTCCGCCCTCAGTTTGGCAGGGTCTTGGTAGACTAAGGGTCTTCAGGTTCAAGGCCACAGGAAAAGAAGCCTGACGTCTAGATTGAGGAAGAAAAGAGTTTAAAGAGTCTGCCTCTTGTGGCTTTGATTTGGGGGGATTCCTCTATGGTGGGTGAGCTGAGGCCATTAGGGTTGAAAGGTGCTGTCGTTGGGCTGAGCCTTAGAGCGCTGGCCAGTGTAGCTATGACTGAGCTACAGATAGCCCTGCCCTTCTACCTGGGGTTTCCTATACTCCTAGCAGCCTGTCAAGATGGAGAGAAATAGAATCTACTTTTAATAGTAAAAGGTGAGAGATTAGCTGTGGGTGTGGGAGAAAGGTCCAGGGTACAAAGAGCCTTGCCCTGGGATCTAGACATTAGAAGTGTACAGTTTTTTTTTCTCTTGAGTTCTTAAAAGCTGTTTAAAGTGGGACTGGCTTCTAGAAGCTGGGTACCAGAAGCAGCAGGAGGAAAGAAGGAAGGCAGTGAGGTTCAATTTGGAGAATCCCCTGGGATGGGAATGGAAGGAACTTCTAAATGAAAGCATTAACCCCAAACACCAAGGATCTCTTTAGCTCCAAGCCTTTTAATTGTTTGATTGCTTTCTAGCTGACACTTGATAGAGGTTCAGAGAAGACTTGGGTCTCCAAGGCAGCCCTGAAATGAATATTAATTCTTGCAGTCTTTGGAGTTGGGAGGAATTGAAGCTTGTCCTACTGGAGGCAGAGGGGGCCTACTATGGTCTGAATGTTTGTGTGTCTCCCTGCCCAAATTCATATATTATAATTTTAATGCCCAATATGATGGTGTTACTAGGTGGGGCCTTTGGGTGGTGCTTAAATCATGAGGGAACTGTCATAAGTGGGATTCATGCCTTATAAGAAACAACCCGGAGAGAGTCCGTGTTCACTTCCACCATGTGAGGATACATAGAGAGGTCTGCGACCCAGAAGAGGGCCCTCACACAGCCTTTCTGGCACCCTGAACTCAAGACCTCAGCCTCCAGAACTTTGAGAAATAAATGTCTGCTGCTTAGAAGTAAGGGGGGAAAGGGGAAGCAGTGACAAACTTTGTTTTCTTGCCCTCCAAAATCACTGCAGACAGTGACTGCCGCCATGAAATTAAAAGATGCTCCTTGGAAGAAAAGCTATGACAAACCTAGACAGTGTATTAAAAAGCAAAGGCATCACTTTGACAAAGGTTCATATAGTCAAAGCTATGGTTTTTCCAGTAGTTATGTACGGGTGTGAGAGTTGGGCCATAAAGAAGGCTGAATGCGGAAGAATTGATGATTTTGAATTTGGTGCTGGAAAAGGCTCTTGAGAAGTCCCTTGGATTGTAAGGAGGTTGTAAACCAGACAATCCTAAAAGGAAATCAACCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAGCTCCAGTACTTTGGCTACCTGATGCGAAGAGCTGACTCACTGGAAGAGACCCTGATGCTGGGAAAGATTGAAGGCAAAAGGAGAAGGGGGTGACAGAGGATGAGATGGTTAGATAGCATCACCAACTCAGTGGACATGAATTTGAGCAAATTCCCAGAGATAGAGGAGGACAGAGGTACCTCTTGGGCTACAGTTCCTGGGGTCCCAAAGAGTTGGATATGACTTAGTGACTGAACAGCGACAACAACAAACTGATATTTTGTTATAGTAGCCTGGAACAGACTAAGACCAGGCCTAAACACTTCCGGTTGAAGAATGGTGGCTTAAAGGGCACACACCCTTTTGAAGTTCTAATTGATAGCCATTTCCACTAAGAAAAGAAGGAGAAGTACAGATTCATGATCTCATATCTGTAATTTTAAAAAGCCCTGAGAAATAAAAGTCCACCCCCCCGCCCCGAGTTTGGCATCCAAACTTATTTGGTGGTAAAATATAACCTAAACTGACTTGAGGTATTTATAGTCTATTTAAGCCACTTAGTATACATTTTCCATGTTTTACTGCAGGAATACTAATATGGAAAGTGGAGTGCTGCTCTAGAGCCCCCAGGAGGTGGGTGGGGGTCTCACATACCATACTATATTACAAGTCTAAATGCTGAGATATATGTGACACTAAGAGTTTTGGATGAGATGGTTGGATGGCATCACCGACTCGATGGACGTGAGTTTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGTGATTCATGGGGTCGCAGAGTCAGACACGACTGAGCGACTGAACTGAACTGAACTGAAGAGTTTTGGACAAGGGATTGTAGACCTGTATTTCAGGCAAATAAGAAAAAGCGTAGAGAACATTATGAACACCCATGTACCCATTACCCAATGTGTAAATTAATCACGATAGCAACAAATGAATCCCTCTGTCCCCCTGCCCTGCAAGCCCTTCTCTCCTTCTCCAAAGGTCACCGCTATCCTGAGTTGATGTTTGTCATTCTCAAGCTTGTTTTTTAAATTTTTACTGCATGTATCCATGACCATCACATATTAGTATCACATTGCGTGGTTTAGACTTTATATAAATTGTACTATAGAAGAGGAAACCTGTTTACTCTTGAGATGGTCTAAGTCTCGTTCTCTCTGCCTTGTTCCCGTCTGGAACCTTGGACGCCCTTGGCTTTCTCGAAGGGCCTTGGCTGTCTCAGTCACTCATCCCTCTCACTCCTGAGCTCCTAGAGTCAGCTGTTCCATCTTTCTCATGATTTCCTTCCTCGACCTCTGTGCCTTACTCCCCTCTTAGGTTTTCTTTCTGGAAGTCTGAGTGTCCTGTTCTCTGAGTGTCCTGTTCCCCAAAGTCTTGTGGTTCCATCCCATCCTTTCCTTCCACCTTTCAGCCCACAGGAGATGGGAAACCCACCTGTTTTGCCCCAGGCTTCTGTGTGAAAAACAGATCTTGAGGGAGAGAAACACCCCCTTGACTGTTATGGCATCCAGAGTGGGGGTGGGGGTGCTTGGAAAGGGGCCAATTTCTAAGGGTCTCAACTTCTCCATGTGGGAAGAGGCTAGGGGAAGAATGGCAGGCCGGAAACTGAGTGGCTAGAATAACCTTAAGACTGACTGCCTTCATTCCCCTGCCTCCCTCTGCACCCCTGCCAGCTTTTTAAAAGAAAATTAAGATATAATCCACGTACTATAAAGTTCATGTGTTTGGGACTTCCCTGGTGGTCCAGTAGTTAAGAGACCACCTTCCAATGCAGGGGACATGGGTTTGACCCCTGGTTGGAGAGCTAAGGTCCCATATGCTGCCAGGCAAGCGCCACAACTAAGACCTAATGCAGACTAAATACATGTATCAATCAATCAATCAATATTTTTTTAAATTCATACTTTTAAAGTATATAATTCAGTGATTTTTGCTGTATTCACCAGCCTATGCAACCATCTCCACTATCTAATTTTAGAACATTAAAAAAAATTATTTATTTATTTGTCTGCATCAAGTCTTAGTTTCAGCATTCGAGATCTTTAGTTACTGCGTGGGAACTCTAGTTATAGCACGTGGGATCTATTTCCCCAACTAGGGATCCAGTGGGGGCCCCCTGCATTGGGAGTCTTAACCACTGGACCACCAGGGAAGTCCCTAATTTTAGAGCATTTTAACCCCTTCACCAAAAGCCACTTCAGATAACTTGAGAAACTGGCACCCGGTGGCCACTGTATCTTTACTTCTCCGTTGCGTGAGAGCTTAGCCTCTTAGCAGTCACTCCCCATTCCCCTTTCCTCCCAGATCCTGGTAACCATTAATCTGTTACTTTCTGTGTCTTTGAATTTGCCTGTTGTGGACATTTTATATAAGTGGAATCATACAATATACTGTTTTTTGTGACTGGCTTCTTTCACTTAATGTTACATTTTCATCCACATTGTCATATTGTAGCAGACCCTCATTCTTTTTCTTGGCTGATTAATATTCCACTGCAATTTGTTTATCCATTCATCTTTGGTGGACGCTTGGGTTGTTTCTGCTTTTTGGCTGTTGTGAATAGCAGTGCTGTGAACATGGGCATACAAATATCTGTTTGAGTGCCTGCTTCCAGTTCTGTTGGGTATACCTAGAATTACTGGATCATATGGTCGAAAAGAGTCAGACACGACTGAGCGACTAAACTGAACTGAACTGACTGATGGTGACTCTATATTTAATTTTTAAAGGAATGCTTTCATTTTTGAATTTTTTCCCCAG
Seq C2 exon
AGCCAGTATTGGAACAACCTGAAATACAGAAAGAAGAATTAGAGGAGCGTGAGGTAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development