MmuINT0050946 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28162912-28164176:+
Coord C1 exon
chr15:28162912-28163049
Coord A exon
chr15:28163050-28163999
Coord C2 exon
chr15:28164000-28164176
Length
950 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCTTCCTCTGCATCTACAGATC
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTGAACCTTCAAAAATGTGACATCATTGAACTAAAATCTCTGAAGGAACCCACGGACTACTTGGCTCTAGCTAGTAATCCCGAGACTGTGGAAAAAGTAGAGTGCTGCATGAGAGTGTGGATCAAACAGATGGAGCAG
Seq A exon
GTAACTTCCAGCATCCTCTGGTCATTCAGAAGCCACATCACCGGAGTCACTGATGGAAGAATTCTATCCTGGTATTCTCACTGTCCCCATCTCATACCACATACTCTAATAAAGAAGAGAGCTTCAGTGTGTTTTCTACTTACGATCATTATTAAAGAAGAATAGGGCTCTGAGGAAGTTGAAACAGGTGATTTTGTAAACTTAGTGACCAGAAAGCTACATTTGGCTGATTCTTCTTGAGAAAACTTCTGCAGAAGTATGGAACAGGTCTCCAATTCATTGTGTCCTTCAACTGAGAGCTACACACACACACACACACACACACACACACACGCGCGCGCGCACACACACACATATAGACAGACAGACAGATAGATATAGGCAGAGGGCTCTTAGTGGCTAAGAACATTTGTTGCTTTGGCAGAGGTCTTGAGTTTAGTTTTTAGCATTCACATCAAGCGATGTAGAACTATCTGGAACTCCTGCTCTAGGGGATCCAACACCCTTATCTGGCTTCCAAAGTTACCTGCATTAACTGGTAATCCTCCCCCACAAACACACATATATACCTAAATAAAAATAAAATCTTGCAAAAGTTTTGAGAAAGTTCTAAGTGGAGGTGACTCTTCCATCCAAACATTATGTACATGTAAAATCACCCTGCTTAGGGCATGAGGTTTCTTGTGTTGCTTCAGTTTATGCATTTAAAGAACAGGCAAGGAAACTGCGTGTATTCATGGCATCCGGAGCTCACTCAAAGTCATCACCTAAGTCAATTGGAAAAAAAAGGTACATTTTGGGTTAGTCAGAGTCCATCATTAGAGCCATGGAATTGAATAAAACACATGATCCACACAGTGTCATTTCTCTGTTCCTACCTTTCCCCCCCTGCTCATGCAGGGCTTTTATACCCCAGATCTCATACAACCGTTCTTCCTCTGCATCTACAG
Seq C2 exon
ATCCTTGCTGAGAACAGTCAGCTACGGAAGGAAGCGGACGATGTGGGGCCCCGAGCAGAGCTGGAGCACTGGAAACAAAGGCTCTCCAGATTTAATTACCTCTTAGATCAGCTGAAAAGCCCCGACGTGAAGGCTGCGCTGGCATTGCTTGCTGCGGCCAAGTCCAAGCTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(3.6=43.5)
A:
NA
C2:
PF083857=DHC_N1=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTTCAAAAATGTGACATCA
R:
TTCAGAAGCTTGGACTTGGCC
Band lengths:
314-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: