BtaINT0050601 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59307257-59308350:+
Coord C1 exon
chr20:59307257-59307394
Coord A exon
chr20:59307395-59308173
Coord C2 exon
chr20:59308174-59308350
Length
779 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
GTTCTCCTGTGCATTCACAGGTC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTGAACCTTCAAAAGTGTGACATATTTGAACTGAAAACCTTGAAGGAACCCATAGACTTCTTGACTCTAGCTAATAACCCTGAGACTATGGAAAAAATAGAAGGTTGTATGAAAGTATGGATCAAACAAACAGAACAG
Seq A exon
GTAATTTGCAGAAACCAAACATCAGACCTAGCTCTCTGAACACTGACTAGTTCACATGCCATGTGACTGAATCAGCCAGTGGAAGAAGGTTGTATCACATCCCTGTTCCATCTGCCTAAGTATTTTACTGCAAGTCCCTAAAAAAGATGAAAGGTTCATTGCAATGTTAATGTATCGTCATTAGTTAAGAAGAGATAGTAAGAATTCTAGGAGATGACAGGAAATGACTTTATATGCTTGTCTACCTAAAACACTGCAGTTGGCCAGGTTTTTCCTCAAGATGTAGTTACTCTGGAGAGAATGCCTATAGGAGTACAGGAGTTTTCTAATTCAATGTGTCTTCCAAAACAAAGCTTTGGACTTAATTGTTAAAAAAAAATTTCAGAAAAGTGAAAGCTAGGTGTTACATCCAATTATTGATGTTACATCAATAATGGAAATTAACCAACTGAAGGCATGAGGACTTCGCAAGGTTGTATTTCTCTGAGGTTCTAAGTGAATAAACCAAAGAAAGTTTCTGAGATCAGGTCCTCCAAAAGTTCATGAAAGCTCCTCAAACAAGTAGTTTTAACTTAGAATGAGTCAACTAAATTTTTTTGAAATTTAAAAAATGGATACATCTCAGGTTAGTAAAAGGCTGTCATTCAAAGCATGCAAATGAATAAAAATATATCATGACTCAGATAGCAGAATTTACTTCTTTCCCTATATTTTGCTTATGTGTAACTTTTAACTCTCCAGCCGACTCATTGGCTCATGGTTCTCCTGTGCATTCACAG
Seq C2 exon
GTCCTTGCTGAAAACAACCAGCTGCGGAAGGAGGCGGATGACCTTGGGCCTCGAGCAGAGTTGGAGTACTGGAAAAAAAGACTGTCTAAATTTAACTACCTTTTGGATCAATTGAAGAGCCCAGATGTGAAGGCTGCATTGGCAGTGCTTGCTGCTGCCAAGTCAAAACTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(3.6=43.5)
A:
NA
C2:
PF083857=DHC_N1=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTTCAAAAGTGTGACA
R:
GAAGTTTTGACTTGGCAGCAGC
Band lengths:
310-1089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]