RnoINT0048999 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80976108-80977475:+
Coord C1 exon
chr2:80976108-80976245
Coord A exon
chr2:80976246-80977298
Coord C2 exon
chr2:80977299-80977475
Length
1053 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCTTCTTCCACATCTACAGATC
3' ss Score
9.51
Exon sequences
Seq C1 exon
GTGAACCTTCAAAAATGTGACATAGTTGAACTAAAATCTCTGAAGGAACCCATGGACTACTTGGCTCTTGCTAGTAACCCGGAGACTGTGGAAAAAGTAGAGTGTTGCATGAGAGTGTGGATCAAACAGATGGAACAG
Seq A exon
GTAACTTCCAGAAGCCTGTGATCATTTCAGAAGCCACATCACCAAAGACACTGATGGAGGAATTCTATCCTGGTACCCTCACCGTTCCCCTGTCATACCACAAAATCTAATAAAGAAGGGAGCTTCAGTGTAGCTTTTACTTATGGTCGTTATTGAGGAAGAAGGTCACTTATTTATGGTCATTATTAAGGAAGAATAGGGCTCTGAGGATGTAGAAATAGGTGATTTTGTGAGCTTAGTGACCAAAAGGCTACACTTTGCTGATTCTTCTTGAGAAAACTTATGTAGAAGTATGGGAGAGGGCCCTAATTCATTGTGTCCTTTGACTGAGAGCTTCAGACTTAACTATAAATTTATACATATTTAATAGTTTATATATATATGTACATATATATATATATGCTTGTATATGGAAGGCTCTAAGTGACTAAGAGCATTTGCTGCTTTTGCAGACGTCTTGAGTTCAGTTTTTAGCATTCACATCAAGCGATGTAGAACTATCTGGGACTCCTGCTCCAGGGTATCAAACACCCCAATCTGGCTTCTAAAGGTACCTGCATAAACTTGCAATGCCCCCCCTCCACACACACACACACACACACACACACATATATACATACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATACAAAAAAAACCTTTCAAAAGTTTTGGAAAAGGTCTAAATGGAGGTGACTCTTTCGTGCAAACAATATGTACATGCATGGAGTTTCTTGAGGCTGTGTTGCTTCAGGTAATGCATTTAAAGAACAGGCAAGGAAGCTGCATACATTCATGGCATCCAGGGCTCATTCGAAGATATCACCTAAGTCATTGTTAGTGAAAGTCAATTGGAAAAAATAAAGGTGCCTGTTGGGTTAGTCGAAGTCCATCATTAGAGCCACGGAACTGAATAAGATACATGGTTCATACAGTGTGCTTTCTTTGTTTCTATTTTTTCTTTTGGGCTCATGCAGGGCTTTTACACAATTGTTCTTCTTCCACATCTACAG
Seq C2 exon
ATCCTCGCTGAGAACAATCAGCTGCGGAAGGAAGCAGATGATGTTGGGCCCCGAGCAGAGTTGGAGCACTGGAAAAAAAGGCTCTCCAAATTTAATTACCTTTTAGATCAATTGAAAAGCCCCGATGTGAAGGCCGTGCTGGCGATGCTTGCCGCGGCAAAGTCCAAGCTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(3.6=43.5)
A:
NA
C2:
PF083857=DHC_N1=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTTCAAAAATGTGACATAGT
R:
TCAGAAGCTTGGACTTTGCCG
Band lengths:
313-1366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]