GgaINT0093143 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76606854-76608374:+
Coord C1 exon
chr2:76606854-76606991
Coord A exon
chr2:76606992-76608197
Coord C2 exon
chr2:76608198-76608374
Length
1206 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ATATTATTGTATGATAAAAGATT
3' ss Score
0.74
Exon sequences
Seq C1 exon
ATCAGTCTGAAGAAATGTGAAACTTATGATCTGAAAAGTCTGAAAGGACCTGCAGATTATCTGATGGTTGCTAACAACACAGAAGATCTTGAGAGAATAGAAGTCTGCATGAAAGGATGGACAAAACAGATTCAACAG
Seq A exon
GTAATACACTGGACAGAAGTGAAATATGACTATATATGCATATTAGCAGATGTTGAAGTTAATCCTGTTGGCAAATAGCTAGCTACATTTCTATAAAGATAAATGTGATTGATCCCTATATCTTAAGTTGTTGTTGGTGTGTTTTGTGTGCCTTCTTTTCTAACTTACAATATTAGAAAGAGCTTTTTCCATCAATTTTTATATGGAAAATACAGTTTTATTTGGAGGCTTAGTTTCCCATTATTGCTAATTGCCACATCCATGCATTGATGAAACCTCTTCATGTGGTTAAAAGTATTGTAAGGTCAGTGTATTTTTTAGAAGTGCTGATAAAATTAAAAAGTAGAAGTTAGAGTTATTTGTATATATAGAGAAAAGTCCTAGTTATTTTCTGCTTTATGAGGGAAACAAAAGCCTTTTCTACAATGAGAGATGTGAGCAAGCAGAGCCTTATCTATATTTAAGCTTATAATAACTTATTAATGTAGACTTTTTCCCACATTGTCTTGTTTTCCAAGGGACTTGAATTGACATTTCTCTTATGAGCATGGCTTCATACTTTATAAAAAAAAATATTGTAAGAACCACTGTTATTGAATAACACTAGAGGTCCATTTAAACCAATGCCATCTCTCTGGAAATGGGAAAAAGTTGATTCTGGAGAAGAGAAGAAAAGCAGAGTATGATAACAGTACCCACTAGATAAGGATCACAGTAATTATGCTCCTTCCTATTCATACTTCAACATTTACTGTAATTTCCATCTGTCCATACTGCATTAGAGAAAGTATTCTGACTGTGGTTATATTATGGTTACTGAGGTACCTCTCTACTTTGTAATATACTCTTGGAACAAACGGACTACTAGACAGATTCACCTTAGCCAAGAAATCAAAGTAGAAAACAATTTTTGATTCCTAGTGGATTTAATGGTAAAAATTATACTATGAAACCAGCTTTGTAGATTATTTGCAGAAAATTTCTGTAACAGCATTCTTGAGAGACTTCAAACTCAAAAAAAAATCAAACTCAGAACTCAAACCAATAGAAGGGCAGACAAAATTAAAGGTCAGTATATTAGATGGTGGCTAGGCTAGGTAATTTATCACAGGAGCTAATACTGGGAATTAAATTATGAATTAAACCACACTATCCATACAGATAAAAGTGTTAGTATCACTTGCTAATATTATTGTATGATAAAAG
Seq C2 exon
ATTCTTGCAGAAAATGACCAGTTGAGGAAGGAAGCTGACAACCTTGGACCGCGAGCAGAGCTTGATTACTGGAAAAAAAGATTGTCTAGATTCAGCTACCTTATGGACCAGCTGAAGAGCCCAGATGTGAAAGCAGTGCTTGGAGTACTCACTGCTGCTAAATCCAAGCTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(3.6=43.5)
A:
NA
C2:
PF083857=DHC_N1=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTCTGAAGAAATGTGAAACTT
R:
GCAGCTTGGATTTAGCAGCAG
Band lengths:
310-1516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]