MmuINT0050980 @ mm9
Intron Retention
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73158541-73162665:-
Coord C1 exon
chr6:73162430-73162665
Coord A exon
chr6:73158703-73162429
Coord C2 exon
chr6:73158541-73158702
Length
3727 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCATCTCTTACTTTCCAAAGCCA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GAATAAGGATGGCTTTCCAAGGCACAGAGGATGAAATTGACCTGAAAAGTATTGAACACCAGGCAGAAGAAAATCCTATACTTGCCAGACTAAACAAAATAAAAGCAAAGGGAATTCTGAATTATGTGTCACTCAAAGAAAATGAACCTGAACCTCCAACCCTGGTATTTAGGCATACCACAAAAGCTCAAGAGAGGACCAGAAAGAGACAGCAGCCTGTGAAGCTGGAGCCTCTG
Seq A exon
GTAAGTTAAAAAAGGAAACCCCAAGCAAACAGATCACACACACACACACACACACACACACACACACACACACACACACACAAACACAAACGCACACACACAGAGTTTTTCCAGCTAGGTTCTCACTATCTATCCCTGGCTGATCTGGAACTTGCTATGCAGACCAGGCTGGCCTTGAGAGTCCATCAGTCTGCCTGCCTCTGCCTCCAAGATAACTTGGAAAAGCGCTTCAAGTTGCCCACCAGAAAGAGAACTATTCTTTCTGATCGTAATGGAGGCGAGGGTGTGCACAGCCACACATTTGTGGACTCGGGTCTTTACTTGTGCTGGACACACAGATTTACAGTGATTCATATTGTTGATGTAAGTCATATTATATTTGATTAATATTTTTTATTAAAATAAGTGTCACATTTTATTAAATTAAATTATTTTCTATATTGATGAAGATTTTTCATGTCATATTTCCCATAATTCCCATTTGGCTCTTTTAATTTTTGATTATTTTTTTAGTGCTTAAATAGTTTCTCTATAATAAGGTCCTGTCTTTTTCATGTAAAAATGATTGCTGACTATTTTAATTTGGTTCCTTATTTTGAAAGAAGGCCCTGTCAGGGGTCTGGAGAGCTGACACAGCAGATAAGAGCTTTTGCTGCTCTTCTGAAGTACCTGAGTTCACTTCCTATCACAACCATCTGTAACTACAGCTCTAGGGATACAACACCCATTTCTGGATGCTATGGGTACCCACACACATGTAGTGCACACATACTCAGACACATACACAAGAATGAAATTAAGGAATTCTGTTTATTGTCAATAATATCCTTTTAAATTCTCATATTTAATTTTCAGCTTTTGTTTTCGATATATATACATATATATCACAGATATATATGTAAATAACAGATATAACTAATTCTAATATTCCTGCCTTTATGACTGAACCAATTAATTTATTTAGTTTTCAAACTATGACCCATAGGTCAAATTGAACACTCTAATCTTTTGGATTGATGGCTGCCGCATCCATTTATTTGCATAATGCCCAAGAGTTCTTTTCTGCTTCCATGTCAGAAGTATATGGTTGTAATAGAAACTCTATGGCCCATAATGCTTAAAACATTTATCTGGCCTGTGGTAGAAAGCTTTTTTCTGAATCTTCATTCCATAAGTTTCTGTCACCCTGGCAAAATGCCTGAGGAAATGAACTTAAAGAGAAGAGGTTTACTGAGGCTCACACTTCATAGGCTTCAGTCCCTGGGCAGCCAGCTCTGCTCTGGACCTGCAACAAGGCAGAGTAAAGTGTTGATGGAGCATGTGATGGAGGCGGCTGTGGCATCCAGGAGGCAGAAAGAAAGAAAAGGGAAGGAGCCGAGGACCATACACACCCTTAACATATGTCCCAGACAACCTGCTTCGCTCAACACTCAAGTGGGCCCCAGCTTCTGGTGTCTGCCATTTCTTAGTAGTATCACTGGTTGTGAACCAAGCCTTCAGCACATATGCATTTAAGGAATGTTCCAGATCCAAATTCTAAGGCAGTTGTTCTAGGTGCCCTGACAAAAATGAAGAATTGATACTGTGGTAGTTAGAATGAGAATGGTCCCCATATATATTTGAATGTCTGCTTTCCAGCTTGAGGAACAATTTGAGAGACTTAGAGGCTTCAGAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGTTTCCTGCTCACAAGTCAGATGACAACTCTCAGCTACCTCCCTGGCGCCATGCTTACCCACTTCCTGCCTTACTCACCACCACGATGGTCATGGACTTTCTTTCTGAAACCACAAGCAAACCCCCAACTAAATGCTTTCTTCTCTATGTTGCCTTGATCATGTTCCTCTCTACAGCAACAGAACAGGAACCAAAACAAACACTAAGGTGATAGTGATATTGATGACCTTATTCTTGATTTTAATAACGGCTTCAGGATTTCTGTACTTAGGGTAGTTGTTGTTCACTATCGGTTTTTGTGAACTGGTTTACAATATGTTAAAATTTTTCTGTCTCTATTTTATTATGAGAAGTTGTAGATAAACACCTCAAAGAGAAATATAATAAGCAGCATTAACAGTGTTGAATTTTCCCTAATTTAACAAAAATATTTTTACATAGACTATGTGTGTGCATGCACACACACATGCATAAAACATATTTAGACGCCAGAGAATAACTTATGAAAATAGGTTCTATCCTTCCAACGTATGGGTTCAGAGGTTAAATGCAGGTCTTAAGCCTTGGCTACAAAGACCCTTATCCACTGAGCTCTCTCGCTGGCCCAGAATAAAGTCTGTTTTCAGAAGAATCAATGTTACAGATGTTAGCAGGGTCTTTAGGAGAGGGAGCAGGGACTGGCTGGCTGAAATCCAGGTACAAGCTCCCTCTCCTGGGAACCACAGACTGTCCCAGTGTCCCAGTGTCCCACACCTCACTGCAGTCTCTCTCTCCTTGCATAGAGACTGCAGCATGGTACTCTCCCTTATCCGAAGTTCCAAATATATGGAAATGCCGAAGGAACCGTGCACAAGCTTACACCCCTCCCACCCAGATTCAAGAATTGTTCCATTTACTTTACGCCTGTCCACACACCCATGTGTGCCTGTTGCTTTGTCACTTAAAGTGGGTTGCGGACATCATAACACTTCACTCTCGGATACCTTGGCTCACAATCAAGAACAGTTCCCTGCAAGATGTAAAATGTTCTTAGAATATCTTTAATTACTTACACTTTTAAAATTACATTTTTGGGGGACATGTGCCAAATGGGAGAGGCATATGCAGGTCAGCAGGCATATGGGGTCAGCTCTCTCCAACAGGTAGGCCCCAAGGAGTGAACTCAGGATACCAGGTTTGGAAGCAAGTTCCTCTACTTGCTGAGCCATCTCCAATGCTCCCTGGCTTTTAAAAATTCATGGTATTTTAAATCAACAAGAGGCTGCTTTCTGATATTAAAATTGTCCCATAGCCTTACTTGCTATCACCATTCTTAGAGAATACATGTTCTTCTCTAAGATGTCAGTGTGGGCTCACAGCTCTAAAAAATATTATTTAACAGGTATGAATGCTTTGCTTAAATACATGTCTGTGCACTGTGTGTGTATGTCTGGTACCCAAGGAGGACAGAATAGAATGTTGGATCTCCTGGAGTTGAGGAAGGAGATGAGCTGCCATGTGTGTGCTGGGACAGAATAGATGTCGATTCAGCTGAATTTCCTGCATGCAGGGGGTTTCTTCATTTGGAAATGGATACCCCTGGAGGACGCCCCGCAGCCCAGGTGGCTTTTATTGACAGGGGATTCCAGGGAGGGGTGTGTGCCCTTTTACCTTGATTGGTTAGCTCTGTCTCTAGAGGTCTGACTGATTCTACAATTGGTTAGACTATGGAGACTTCCCGGGGTGGGGTGGGGGTGGGGTGGGGGTCGGGGGTTGCCTACTCTTTCTAGCTACCTATTCTTACTTCAGGCCAGATGACAAGGTGTCCTCAGATTGGCAGCCTGAGGCTGTGGTTGGTAGACCACAGGTTCCTGGATCCAAGTTCTCATTTCTGGGATACAGAAACTTAGGCTGAGTCTCCCAAACTGTCAGTGTGAGTGAAGCCTGGCTCTGGCTAACTCAGTCCTCAGTAGTAAAGAACAAAGTCTGCAATGACATTCACAAGATAATCCCATCTCTTACTTTCCAAAG
Seq C2 exon
CCAGTGCTAAAAGTCTACCAAGATCACAAGCAGCCCGAGTACATATATGAACAGAATCGACAGAAGCTCATGAGCTCTGGAATTCTTAAGCCATCACCAAGCACGGCTGACAGAGCTTCAATCATTAGTCTCGAGGCCCAAGAAGCTGTGAAAAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-Dnahc6:NM_001164669:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=NA C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: