RnoINT0049004 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101150144-101156576:-
Coord C1 exon
chr4:101156349-101156576
Coord A exon
chr4:101150306-101156348
Coord C2 exon
chr4:101150144-101150305
Length
6043 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CCATCTCTTACTTCCCAAAGCCA
3' ss Score
4.24
Exon sequences
Seq C1 exon
ATGGCTTTCCAAGGCACAGAGAATGAAATCGACCTGAAAAGCATGGAAAACCAGGAAGAAGAAAATCCTGTGCTTACCAGACTAAACAAAATAAGAGCAAAAGGGGTTCTGAATTATGCATCTCTCAAAGAAAATGAACCTGAACCCCAAACCCTGGTATTTAGGCACACCACGAAAGCTCAGGAGAAGACCAGAAAGCGACAGCAGCCTGTGAAACTGGAGCCTCTG
Seq A exon
GTAAGCTAAAAAGGAAACCCCAAGCAAGCAGCTCACACATATACACACAAACATACAATACATTCATATACATGCACACACACACACAAAAACATACATGCAAGCATACATACACACAAACACATATATACATGCACACATATACACATACACATACAAACAAACACATATATACATATTCACACAAACACATACACACACAAACACACATACACAAGCACACAGACACACACACACACATACACACACACAAACACAGTTTTTCAGATAGGTTCTCACTATGTGTTCCTGGCTGATTTGGATCTTGCTATGCAAAACAGGCTGGCCTTGAGATTACATTAATCTGCCTGCCTCTACCTCCAGTATAACTTTGAAAAGTGCTTTGGGAAAAAAAAAGTTGTCCTCCAGAAAGATAGAACTATTCTTCCTGCTTCTAATGGAAGCGAGGATGTCCACACCCACACATTTTATGGACTAGATGCTAGCAGGTCTTTACTTTAGACACACAGATTTACAGTGACTCATATTGTTGGTATAAATCATATTACAATTGATTAATACTTTTTATTAAACTAAATATCATATTTTATTACATTTTTCTATGTCGATGAAGGTTTTCATATCATATTTCCCATAATTCACATTTGGTTCTTTTAATTCTTGATTAAGTTTTTAGTGCTTGAGTAGTTTCTCTATAATAATGTCCTATCCTTTTCTTGTAAAATCGACTGTTGACTATTTTAATTTTGATCCTTATTTTGAAAGAAGACCCTGTCAGAGGTCTGGAGAGCTAACACAGCTGATAAGAGCATTTGCTGTTCTTCTGAAAAATCTGAGTTCAATTCCTATCCCAACCACCTGTAACTACAGATATCGGGATACAAAAGCCACTTCTGATTGCTATGGGCACCCATACACATGTAATGCATGCATACTTAAACACGTACACAAGAATAAAATTAAGGAAGTCTGTTTATTGTCAGTCGTGTCCTTTTAAATTCTCATATTTAACGTTCAGCTTTTGTTTTCAAGATATATATCACAGATATACATGTATATAACAGATATAACTAATTCTTACACTCCTGCCTTTATAATGGAACCAATTAGTTTATTTAGCTTTTATGACCCACAGGTCAAATTGAACTCTTCAACCCTCTGGATCGATTGTTGCCACATCCATTTATTTGCACAATGCCAGACTTCTTTTCTGCTATTAGGGCAGAGGCATATGGTTGTAATAGAAACCCTCCAGCCCATAACGCTTAAAACATTTATCTGGCCTGTGGTAGAAATCTTGTTTTCTGAATCTGCATTCTGTACATTTCTGTCACTGAGACAAAATGCCCAAGGAAATCAACTGAAAGCCTCATAGACTTCAGTCCATGGGCAGCCAACACTATCGCTGGAGGAGGATGGGAGCCATCACTATGTGATGGAGGAGGCTATGGCATCCAGGAAGCAGAAAAGAAAGGAAAAGGATGGAGCCGAGCACCATACACACCCTTTAATGCATGTCCCAGACAACCTGCCTCATTCAGACGGGCCCCGGCTTCTAGTTTCTACCATTTCTTAGTAGTGTCACTGCCTTCACCACATAAGCATTTAAAGAACATTCCAGATCCAGACTTTAAGGCAATTATTCCAGGTTCCCTGACAAAAACTAAGAATTGGGTACCATGGTGGTTTGAATGAGAGTGATCCCCATAGGGTCAAATACTTGAATGTCCCGTTTCCTGCTTGAGGAACAATTTGAAAGGCTCAGAGTTTTCAAAAGCCGCCCCCATCTCTCTCTCTTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCCCTCTCTCTCCCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCTCTCTCTCTGCCTCCTGCTCATGAATCAGATGATAACTTTCAGCTACCTGTCTGGGGCCATGCTTATCAGCTGCCTGCCTTGCTCACCACCGCCAGGCCATGGACTCTCCCTCTGAAACCATAAGCAAGGCTCCAACTAAATGCTTTCTTCTGTAAGCTGCCTTGGTCATGGTGTCTCTTTACAGCAACAGAACAGTGACCAGAACAAATACTAAAGGGGATAGTGATATTAAGGATCTTAGTCTTGATTTTAATAATGGCTTTAGGATTTTTGTACTTAGGGTAATTGCTGTTTGCTATTGATCTTCGTGAGGTAGCGGACAACACGTTAATTTTATTTTGTCTCTATTTTATTATGAAAAGTTGTAGATAAACATCTCAAAGAGAAATATAATAAGCAGCATTAACAGTGTCGATTTTGCCTAATTTTTCAATATTTTTATTTATAACTTTGTATGTTTATGCACATGCATAAAAATGTGTGTAGACATCAGAGAGTAAGTTCTGTCCTTCTAACCTAAGGGTTCAGAGGAGGAAATGCAGGTCTTAAGCCTTGGCTGCAAACACTCAGCTCTCTCGCTGGCCCAGAATAAAGTATTTTTCAGGAGAATCAGAGTTATAGGTGCCGGGCAGGACCCTCAGAAGGAGGAGCAGGAACTGGCGCGCTGAAATCCAGGTACAAGCTCCAAGTACTGGGAGCCGCACTCTTCCAGTGTCCCAGTGTCACACACCTCACTGCAGTCTCACCCTCCTTGCACAGAGATGAGCAGTACTGTCACCAGTGTGAGTCTGTTTTTGTCATTTTACTACTTTGCTTTAAAATCCCCATTTCTTCCAATTCTCTCTCATCCGAAGTTTCGAATATATGGAAATGCTGAGGGAACAGTGCATACACTTACACACCTCCCACCCAGACTCAAGGACCGTTCACGTGTCGTCCCATTCACTGTGCGCCTGTCTGCACACCCCTGTGTGTTTGTCACTTTATCGTTTAGAGTGCGTTGCGAGCATCCTAACACTTCACTCTCGGATGCCTTGGCTCACAAACAAGAACAGCTCCCCGCAGGCTGTAAAATGTTCTTAGAATACCTTCAATTACTTAAACTTTTAAATTATACTTTTGGGGGGACATGTGTCATATGGGAGAGGCATATGCAGGTCAAAAGACAATTTGTGTGTGGGTGTCCGTTCTCTCCAAAAGGTAGGCCCCAGGAATGAGCTCAGGCTATCAGGCTTGGAAGCAAACGCTTCCACTTGTGAGTCATCTTCATGCTCCATGGCTTTTAAAACTCATGGCATTTAAAATCATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTCCTCAAACTGGAGTTGAGGAAGGTTGTGAGCTGCCACACGGGTGCTGGGAAGCAAATCTAGATCCTCTGCTAGAGCAGCAAGTGGTCTTAACTGCTGAACCATCTCTCCATTCCTTGTTTGTAGGTCTTAAAGAATTTGTTATTAGAGCTGGTGAGATGGGTCAGGAAGTAAAGGTACCTGCTTGCTGCCGAGTCTGATGACCTGAGTTCAATCCCCAGGGAGAAGGAGAGAATTGACTCCTGAAAGTTGTCCTCTGACTTCCACACTTACAGTATATGCAGGAACATACATACCATGTTCAGGGGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGAATTGACATAATTTAGGGCTAACCTCAACTGACAAAATGCCTCCATCAGATTGGCCTGTAGGGGGAATTGGTAGGTGGGGCATTATCTTGGTTAATGGTTGATGCGGGAGGGTAGGCAGCATTCTTCCATGGTCTCTGCTCCTTAGATTTCCGTGCCCTTCACTTTCTCCCTACATTTATCTGCCCCAAGGTGCCTGCCTTGAGGTCCTGTCTTGGTTTCCCTTGAGGGGCTGTAAGCTGCAAGAGAAGTGCACACTTTCTTCCCCGTGAGGCCTTGCATTTGGTCACAGAATCTATCAGAGCAGCAGTAACAAACTAGGACACCTGGTAAGCACAGGGACCTGAGTTCATCCTCCAGAATTTGTGTTACAAAGCAAGCCCAGGGAGGGTGGCAGGTGCTTGCCATCCCAATTTGAGGAGGGCAACAGGCAGATTCCCTGGGGCTGGCGAGCTATCCGGCCTATTCTGCTTGGTGAGTCCTAAGACAATGAGAGGAAACCTGTCTCAAAAAACTGAAGTGGAGAGTACTCGAGGAATGACAGCCAAAGTTTCCCTCTACCCCACATACACATAGGAGCACACATGTACTTGAACACACAATACAAAACAAAACAAAACAAATCAACAAAAAAAAGTGTGCTTACTGCATTCTGCTCCCTTTTCCTGCATTTATCTGCTGTCTTCTCTCTTTCCTTGAATTTATCTGGACTAATATTTTCTTTGCCCCCATTGTGTCTGTCTCATTCAATTGACATCCTGGTCTCTAAAGTTCCCTAAGTGGGGGACACTTGGAATTTTGTCCTTGAATAGATCTTTGAAAGCTTAGTAGAGCCACGCTACTATGAAATCTTCAGTCTGCCTCTAAAACCTACAGATTGAATGTTGGGTGGTTCATACTTGGTTTTTATGATAAATCTCATGTCTTACGGTAAGTTTATAGTTGGTGAGGTTGTGTAGTGGTTTGAATAAGAATGACCCTCATTGGCTCATATATTTAATCACCAGCGAGTGACTATTTGAAAGGATTAGAAGGATTAGGAGATGAGGCATTAGGGGAGTAGAGGAAGCCTTGTTGAGAGAAATGTGTGACTGGAGGTGGGCTTCGAGGTTTCAAAATCCCATCCTAGACTCAGGCTTGCTTGCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTATCTGCCTGCAGATCAGAATGTAGCTCTAAGCTACTTCCGCCACACTCTGCCCACTACTCCTGCCACCATGCTCTCTGCCAGATGGTAATAGATTAAGCCTCTGAAACTGTCAGCAAGCCCCAGTTAAATGCTTTATTTTATAAGAGTTACCGTGGTCATGGTGTCTGTTCACAGCAATAGAATAGTGACTAAGACAGATTATGTACGGCTTTGGGAATTGAATTCAGAAAAACATGTACACTAGAGAATAGTCAGGAAGGAAGTTTCTGCCAGCTATATAGCATCTTCTCACCTTTCCCCTGTGTGTTAGAAGAAGGTACAACAGTATAACGATTTCATAATTCTTTCCCCAGACAGAAATCTTTGAGAACCTTTCTTTTGCTTTTGGTTGCTGTGACAAATGCTATGTCTAAAAGCAACCAGGAGAACAAAGGGTTTCATTTCCACTGAGCGTCTGCTGGAAATTTTCAGGTGTCCCATTCTAAAGGTTCTTTTATATCCCAGAGCTCTGGTTCTGTTTTCTGTCAGCACACAGACTTATGTGTTGCTCGTTTCATCCAACAGTCTAGTGATAGTAAATTTGTCACAGTTAGTTAGGGGTAAGTGAGCGTTCCTTAATCTTAGTTCTAGAAGTGCTGACACCAAGCAGAGAAGTCTTATTTGAACATCAGACCAGTGACAGGAAATGGAGACCCATGGTGGACTTACAGGCCCAGCTTTTATTGTCAGTTAGGGGAATTCCGGGGAGGGGTGTGTGTCCTTTTACCTTGGTAAGTTAACTCTACCTCTATGGGTCTCAATTGGTTAGACTCTAGAGACCTCCCAGGGGGTTGCTTGCTCATTCTGGCTACCTAATCTTACTTCAGGCCTGATGACAAGGTGTCATCGGATTGGCTGCCCGTGGCTGTGGTTGGCTGACCACAGGTTCCTAGATCCAGGTTCTCATTTCTGGGAAACAGAAGCGCAGACCTAGTCTCCCAAACTGTCGGTGTGTAGCCTGTTCCAGAGTCAGCCTGGCTCTGGCTAACTCAGTCCTCTCAGTAGTAAAGAACAAAGTGTACAATGACATTAACAAGATAATCCCATCTCTTACTTCCCAAAG
Seq C2 exon
CCAGTGCTAAAACTCTACCAAGATCATAAGCAGCCCGAGTACATATATGAACAGAATCGGCAGCAACTCATGAGCACTGGAATTCTAAAGCCATCACCAAGCATGATTGAAAGATCTTCAATTGGTAGTCTTGAGGCTCAAGAAGCTCTGAAAAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]