MmuINT0051223 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65853766-65858285:-
Coord C1 exon
chr11:65858128-65858285
Coord A exon
chr11:65853905-65858127
Coord C2 exon
chr11:65853766-65853904
Length
4223 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTCTGTCTTTCTGCATCCAGGCC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTAAAAAGCATCCAGGATGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGAGAGGAGATTAGCCTTGACCCTTCAGTGGGCATCTTCATTACCATGAACCCAGGCTATGCTGGCCGCACAGAACTGCCAGAGAACCTCAAGGCCCTTTTCAG
Seq A exon
GTATGTATGTCTCTATACAAGGACTCCCCAAAGAGGAATTTCTTGCATTTTCCTACTAAAAATGTGGTTTATACATTAGAGAAAATTTGGAACATTTAGAGAGCAGACTTTCCCCCCAGTTGATACCCCATTAATCTTCTGTTTGCCCTCAGATATCAAATAGCTTCATGGTTTGGGGTGGGACCCTGAGTCTGTTTCCCTCTCTCTATCCTATGACCTAGTCTGGCTTGGAGCTGTGCAGGCCTTATGTGTTCTGCCACTGTCTGTTCATATGTGCATAAGCCCTATAGTGTTGGAGAGGGAAAATATGATCAAATATATTTAATGAAAATAATTAATTAGGGAAAACAAAAGTAGATTTTTAAAGATCTACTTTTACTATAATGACATAATTAGTAAAATCATTCTTTGTTTAATTGCAGCCCGTACATATCACATATGTATAATATTAATTTTATTTTATATAGTTGCAATATACACTTGCTACTTGTATACAATTCCATTCTTTATTTTTCATCCCCTAGCCTATCATAAATATTTTCTCCTATTGGGTATTTTTAATAAATCTCATCCCATGGCTACATATTTTTCCATCAAGTATGTGGTTCATGGTATAATTAATTGGCCCCTCATGGCTGCATATTAAAAATGTTTCTAGCATTTAAAATAAATTCATACACAATTCTGTAATGTACATTTTTTGTATATAAATCTTTTTTCTGTATGCATGATTATTTTGTTTGGCTAGCTTCCCAGAGTGGAATTACAGAGTTAACGAGCGGGAACATTTTTAAGGCTTTTGATACACATTGCCAAATTACTTTCTAAAAAGCTCAGTGTCAAATTACATCCTGGTAAAGACACATGGAAACACCCCTTTTACCTTACCCTTGTCGCCTGGGCGTATGGCGATGTTTTTACATCTTTTTTTAATTTTATTTCGATAAGAAAACATAAAGATCCTTGCTAGCAGGAGCTAGAGTTTGCATTCTTTCTTCAGACGAGTGAAGTTGGCCCGACAAAGAGAGAAATGAAGGATGTTTCCTGCTTTTGGAGCTTCTGTTAAACTTTTTCCTAGAGAGATAGTGGGAAGTGTGACAATCTGTTTGTCTCATTTGGCAGCTGGGGGACAGTGCCCTCTCCAGGGGAGGTGGAGTCCACCTCATGGTACCCAGTCAGCCTGACAGACTTCTCACTAGTTGCCCCAGTCTCTCCCAGATTTGGGGGTTCGCTTGCTTGCTTGCTTCTTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTCCTTGCTTTAAGACATAGTCCTACTGTGTAGCCCAGGCTGGCCTAGGACCTGTGATTCATTTGCCTCAGCCTCTTGAGTGCTGGGATTGTAACTATGTGCCACCACCCATCTGGCTCAGCCTCTCACTCCATTGTAGCAGTTCTCTGTCACACCAGTGTGGGTGTGTCTTCACTCAAGCAACTCCTACTTTAAACAAAAACCATTGAAATGTTAGCAGGCTGTACTCACCATCCCAGAACACTACACTGTTGGCTGTTCATTTCCATATTTACTAAGTAAGGTAGGTATGACAAACAATAATACAGGCAGGTTCAACCAAAATTGTTCTTTGTGTTTTCTCTTTTAATTTAAAGTCATCTCAAGCTGCTGTAAACTAGCTGACCTAAACAGTAGACACTTCACAGGGTGCTTGAAGCCAGACGTCCAAAGTCTCAGAGGGTCAGATGGTCAAGTTCTGGGATGGCTCACTTCCAAGTTTCAAGAGATGGTCACCTCAGGTATTCCTCTGTGGCAGAGAACCAGCAAACTTGCTCTCAGACCAACGGTCTCAGGCTCATGACCTCTACTCCCCAATCTCATCACACTTAGGGGTTCCATAACAATCTTAGGGGGCACAATTATTCAGACTCTGGCAGTCTAAAATATATACATAGAAAACAGATGAGAAAAATAAGAACAATAGTTTTGAGTTATTTATTTTTATCTGAGGTGTATAAATATCTTGCCTGCATGTATGTATGTGCACCACGTACATGTTGTACCAGCTGGGTTTTTGCGTCAACTTGATCCATGCTAGAATCATCAGAAAGGAAGAAGCCTCAGTGGAGGAAATGCTACCATGAGATAAAGCTATAAGGCATTTTCTTAGTGATCAATAGGGGAGGACCCAGCCCATGGTGGGTAGAGCTATCCTGGGTTCAATAAAAAGGAAAGCCAAGCAAATCACGAGAAGCAAGCCAATAAGCAGCATGCCTTCACGGCCTCTGCATCACCTTTGCCTCCAGGTTCCTGTGCCATTTGCGTTCCTGTCCCGACCTCCTCTGGTGATGAACAGCAGTGGAATGGGAAAGTGTAAGCTGAGTAAACGCTTTTCTCCCTAACTTACTTTTGGGTGTTTTGTTGCAGCAATAAAAATTCTGAGACAATGCCTGCTTCTCACTAAGGCCATAAAGGACATTGTATCTTCCGGAAGTAGAGTTACAGATGGTTGTTACTGGCCATGTGGGAGCTTGGAATGAAACCCAGGTCCTCTGTCAGAATAGCAAATGATCTTAAGTACAAACCCATCTCTCTAGCCCCGAGAAAGATATTTTTTATAATAGTAAGATGAACATCTATCTATTTTACATTAATTTTCACAAAGGCCCTGTAACATCGATACTATTAATTTCCCCCATGTACTGTGAGAAAATTGATGGATTCCCTGGTAAATAACAGCAGAATGGGAGTTTGAACCCAGAGCCTTGGCTCCTCTCAGCCTAGCCCTGTTACCTAGAGGCAATCCTGTAATTTCTTGTCATTTTTCTTCCCACACTGTGTCAGCATTTATTCTTTAAAGCTGAGAACTGGCAATGTTGTTTAATATATTGCTTTCATTAATTAATATTTTCCCATGTTACTTGCTAATCTTCCTTCTGCAGCATAATTTTCCACAGCCCCATTAAATACCATTGATGTCCTCATGTTCAGACTGCCAAGTGATTTTGAGAACCTAAATATCTGGTGGCTTCTTCGATCCCGACTGTAGTGCAAAACATTTCAAAGGACAATATGTACTTGAATTACTTTGAAAAATAAATGTTAACAACACAGGAAAAAAATGCAATTGAGACTTGACAGGGAGATATCTCAGCCAGTAAAGTGCTCATGTTACAAGCATAAGGGCTTGAGTTTGGTCTACTTCTTAAAAGCTGGGAGTGGTACCAGTCATTCCAGCACCCAGGAAGAAAATGAAGGTATCTATCTCCCTGGAGCTTGCTGGCCAGTCAGCATACCTGAATCAGTGAGCTGCAAGCCAGTGAAATGCATTGTTTCAGCAAGATGGGTGGCTTCTGAGGAAACATATTCAAGCTTGACTTCTGTCCTCCATATCTGAGTTCAAACCCATGCACACACAATTAAATAATTGTAAGTTCCCATGACATACCAAATAAATTAATAGCTTTGACAAGTCACTTAAAACTTTAAAAAAATATATCACTAGTGCCAGAGAAAAGAAGACCACAGTAAATTCTTATATAGAGATGAAAACCTCAGCTCTCCTGTGTTCTTGTGTACTCTATCTAATGTCAAGATGACGCTAATCTTGACCCTGGTCCTTAGCTTTGGAAACTTAAATAAATGTCTATACAAATAAATACAAAATAAGTCATGGCCACCTGGAGGACATCCTCACCATGAGGAGAAGGAGATGAGAAACTCTCTGATTCCAGCAGACACCCAGGGAGAGACTACGTTCCCCGATCTTAGCTCCTAACCAATTTTAGACAGCTTGCTGTGTTAATCCTTGCCTTTGCATGAGGCACATTGACCTTAAGACACAAGACCTGAGCTGTATCCCTGACTCTTCCTCACTCCTACTAACATTATCCATCACTCTGGGGTAAGAGGTCACTCCCTTTATCCTTAGTTAACTCATCTCAGACATAGAAGTGCGAGATGGAGTGATTGCAAAGGTCTTTCCATGAAGTTTTGCCCTTGAAGACAGCTCTTTGTATGGTCACAGCAAGCATCTCTTGTCCTGCAGTCTCTCCTTCAACTCAGTTTCTCAGCCTCTGTCTTTCTGCATCCAG
Seq C2 exon
GCCCTGTGCAATGGTAGTTCCAGACTTTGAGCTGATCTCTGAGATTATGCTGGTAGCAGAAGGATTCATTGAAGCCCGGTTGTTGGCCAGGAAGTTCATTACCCTTTACCGGCTGTGTAAAGAACTTCTCTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: