GgaINT0127360 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1073236-1074816:+
Coord C1 exon
chr18:1073236-1073393
Coord A exon
chr18:1073394-1074677
Coord C2 exon
chr18:1074678-1074816
Length
1284 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTCTCCTGTCCTTCTAGGCC
3' ss Score
12.66
Exon sequences
Seq C1 exon
GTGAAGAGTGTGCAGGATGCAATAAGGGAGAAGAAGAAATCCTTCAATTTTCTTGGAGAAGACATCAGCTTGGTACCTTCGGTGGGAATTTTCATCACCATGAACCCCGGTTACGCAGGGCGAACTGAGCTACCTGAGAATTTAAAAGCTCTCTTCAG
Seq A exon
GTGAGTCCAGGTCAGCTTTTATATCCTGTATAAGGCTGACAGGAATTGTCTTTTGGGATATCCAGGCTTGACTTTGTTTTCCTGGAGAAAATGCATTGGCGGATCACAGATTTCCGCCTTGCACAAGAAGCCAGAAGCAGGAGTATAGAGGCAGGGAAAATGAGCTGTGTGCTTTGTGCTGGTGAAGTCAGTGCATGACCTGTCTCACAGGAGTAGTTCTGGAAGATAGCATTGCAAATCCACTGCCCTTTTACAGCTGCAGACTGACTCCTCATTCTCAGCAAACACAGGCTGTTGCTGCCTTTTGGCTCATTTCTCAGTAGTTGAATATTGTAAAAGTACAGCCCTCATCCTTCAGCTGGACAGGGCAGGACTGGGGGGGTTGGAACTTGATGGTCTTTGGGGTCCCTTCCAACCGAAGTCATTCTGTGATCTCATTCCCTCTCACCTTCCTATGGAACAATATCAGATAGATAGCCTGAACCTCTATCTGCTCTGCTCTGGGATTCATTATTCCACTTGCTTTATTATCACACATCTCTATGAGCTTGGACGGCTGTTTTTCCTCTGACGCATCACCTGGACATGGGGTTGGTGAGCACACGCAGGGCTCCCACCCCCAGCTCCCTTCCCTTCCACTCCCACACCAGCACTACCTGCAGTGGGAGGGACCCGTCCTCTTTTCAGCACAGTGCTAAGACTTTGCAGAAGGTAGGGGAGAGGCCCAAATCTGTGTCTGCCTGCAGATTCCTGCACCAAGCCACTGGTATTATCCTTTCCTAAGTATCACACAGTATTCACTATTGCTGATTCACCAGATTCAGCATCTGCTCTCCTATCCATCAGGATAAGACTATTGCCCGGAAACAAACCATTGTAGAAAGGAGATTTCAACAATGATATTTTCTTCTGAAGGCTCTGATTTTCCCCCATCAGTGCTGGCATGGATGTTTTTAGGTGAGCTTCAACACAGACTCATGTTTGAGCTCAGGAAAGAGCTTGGATAAACTCAGGAAGAGCTGGACTGGCAGCTTCTGTGTCTTTGGGGTTGCATAAGCTGCAGTATACAATCACAGAACGATTTGGGTTGGAAGGGACCTTAAAGATCATCTAATCCCAGTGCCCTGCTGTGATCAGGACAGATGGTAGCATAAGCTTTCTGTTTTATGTACATCCTCTGAATTCTAGCCCAGTCCGTGCTAATGCCGGCAGCAGACTGTGCCTGTCCCCTCCTTATAAGACCTGAAGTGAAAGGTTTTGCTCTTTTCTCTCCTGTCCTTCTAG
Seq C2 exon
GCCATGTGCAATGGTTGTGCCAGACTTTGAGCTGATCTGTGAAATCATGCTGGTGGCTGAGGGGTTCATCGAGGCTCGTGCATTAGCCAGGAAGTTCATTACTCTGTACCAGCTCTGCAAGGAGCTCTTGTCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGAGTGTGCAGGATGC
R:
CTGCTTGGACAAGAGCTCCTT
Band lengths:
297-1581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]