RnoINT0049254 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52560674-52565053:-
Coord C1 exon
chr10:52564896-52565053
Coord A exon
chr10:52560813-52564895
Coord C2 exon
chr10:52560674-52560812
Length
4083 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTCTGTCTCCCTGCATCCAGGCC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTGAAAAGCATCCAGGACGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGGGAGGAGATTAGCCTTGACCCTTCTGTGGGCATCTTCATCACTATGAACCCGGGCTATGCTGGCCGCACAGAACTGCCAGAAAACCTCAAGGCCCTCTTCAG
Seq A exon
GTATGTATGTCTCTACACAGGGCCTCCCCAAAGAGGAGTTTGTTGAATTTTCCTACTGAAAATTTAGTTTATTCGTTAAAGAAAATTTGGAACGTTTAGAGAGCAGACTTTCTTCCCACTGTTGACATTCCGTTGATCTTCTGTTTGCCCTCAGATATCAGTAGCAGATAGCTTCATGGTTTGGGGTGGGACCCTGGGGCTGTTGCCCTCTCTCCATGCTATGACCCAGTCTGGCTTGGAGCTTTGCAGGTCCTGTGTGTTGTGCCACTGTCTCTGTGAAGTCATATGTACATAAGTCCTATTGTGTTGGAGAAGGGAAAACATGGTCAATATATTTTATGAAAAAACTGAATAAAAAAACAAAAGTAGATTTTAAATATCTACTTTTACTATAATGACGCCACCAGTAAAATCATTCTTTGCTTAATTGTAGCTCACACATATAGCATATGTATATATTAATTTCTTTTATATACTTGCGATATACATTTGCTACTTGTGTACAGTTTCATTCTTTATTTTTATCCCCTACCCTATCATAAATATTTTCTCCCATTGGGTATTTTTAATAAATCTCATTCCATGGCTACATATTTTTCTATCAAGTATGTGGTTCATGGTATAATTAATTGGCCTCTCATGGCTGCATATTAAGTGTTTCTAGCATTTAAAATAAATTCATACATAATTCTGTAATGTACATTTTTGTACATAAATCTTTTTCTGTATGCATGATTATTTTGTTTGGCTAGCTTCCCAGAGTGGAATTACAGAGTTAACGAGCAGGAACATTTTTAAGGCTTTTGATACACATTGCCAAATTACTTTCTAAAAAGCTCAGTGTCAAATTACATCCTGGTAAAGACACATGGAAACACCTCTTTTATTTCACCCTTGTTGCGTGTGCATATGGCAGTGGTTTTAAATCTTTTTTTAATTTTATTTTGATAAGAAAACATCAAGATCCTACCTAGCAGGAGCTAGAGTTTGCGTTCTTTCTTCAGGCAAGTGAACTTGGTCAGACAAAGAGAGAAGTGGAGAGGATGTTCCTGCTTTTGGAGCGTCTGTTCATTAAACTTTGTCCTAGGAGAAAGATAGTGGGAAGTGCGATAGTACTGCCTGTCTCATTGGACAGCTGGGGGACAGTGACCTCTCCAAGGAAGGTGGAGTCAACCTCATGGTCCCCAGTCAGGCTGCCAGACATCTCACTAGTTGCCCTACTCTCTCCCAGATTTGGTCTTTTGCTTGCTTGCTTGCTTGTTTGTTTGAAAACATGGTCCTACTGTGTAGCCCAGGCTGGCCTAGGACCTGTGATTCTGTTTGCCTCAGCCTCTTGAGGGCTGGGATCTTAACTGTGTATCACCACACATCTGGCTGAGCCTTATACTCCTGTTGAAGCAATTCTCTGAGTCACACCAGCGTGGGAGTGGCCTCACTCAAGCAATTCCTACATTAAACAAAAACCATTGAAATATTAGCAGGCTATACTCACCGTCCAGGAACACTGCACTGTTGGCTGTTTATTTACACATCTATTAAGTAAGGTAGATATGGCAAACAATACAGGCTCCTCATGTTTTCTCTTTCAATTTAAAGTCATCTTAGTCTAGGCCATCTACAGTAGCAAACTGCTGTAGACCAGCTGACCTAAACAGTAGATACTTTTCAGAGTGCTTGAAGCCAGAAGTCCAAAGTCTCAGAGGCTCAAATGGTCAAGTTCTAGAATGGATCACTTCCAAGTTGCAAGAGATGGTGACCTCAGGTATTCCTCTGTGGCAAAGACCAGCAAACTTGATCTCTGACCTCATCCTATTCCTATGGCCTCAGTCTGTATGACCTGTACCTCCCAATCCCATCACACTGGGGGGTTTCCATAACAATTTTAGAGAGACACAATTATTCAGACTCTGGCAGTCTTAAATATATTCATAGAAGAAAGATGGGAAAAATAAGAACAATAGTTTTAAGTTATTTATTTTTATCTGAGGTGTATAAATATCTTGCCTGCACGTGCACTACATACATGTTGTACTGGCTGGTTTTGTGTCCACTTGTCCCAAGCTAGAGTCATCAGAGAGGAAGGAGCCTCAGTTCAGGTAATGCCACCATGAGTTATAGCTAGAAGGCATTTTCCCAATCAGTGATCAATGGGGGAGGGCCCAGCCCATGGTGAGTAGAGCCATCCCTGAGCTGATGGTCCTGGGTTCAATAAGAAGGAAGGCCAAGCAAACCATGAGGAGCAAGCCAGTAACAGCATGTTTTCATGGCCTCTGCATCAGCTCTTGCCTCGAGGTCCCTGTCCCATTTGAGTTCCTGTCCTGACTTTTTTTTGGTGATGAACAGCAATGTAGAAGTTGAATAAACCCTTTCCTCTCCAACTTTTTGGTCATGGTGGTTTTGTTGCAGCCATAAAAGCTCTAAGACAAAGCCTGATACCCATGGAGGCCAGAGAAGGACATGGTGTCTTCTAGGACTAGAGTCACAGATGATTGTTATTGACCATGTGGGAGCTTGGAATGAAGCACAGGTCCTCTTTCAGAACAGCAAATCATCTTAAGCACAAACCTGCCTCTCTAGCCCAGAGAAAGAGATCTTTTAAAATATTAAGATGAACATCTATTTTATATTAATTCTCACAAAGGTCCTATAACATCGATACTATTAGTATCCCCCTGTACTGCGACAAAATTGATGGATTCTCTAGTAATTAACAGCAGAATGGGAGTTTGAAACTGGAGCTTTGACTCCTCCCAGCTCAGTCCTGTTACCTAGGGGCAATCCTGTAACTTCTTGTCATTTTTCATCCCATACCATGTCAGCATTTATTTTTCATAGCTGGGAGCTGGCAACATTGTTTAATTAATATAATTAATTAATATTTTCCCATGTTACTTGCTAATCTTCTTTCTGCAGCATAATTTTCCACAGCCCCATTAAATTCCATTGATGTCCTCATGTTCAGACTGCCAAATGATTTTGAAAACCTAAATATTTGGTGGCTTCTTCGATTCTGACTGCAGTGTAAAACATTTCAAAGGACAATATGTACTTCAATAATTTTGAAAAATAAATGTTAACCATGCAGGAAAATACAATTAAAGAGATTTGACAGGGAGATATCTCAGCCAGTGAAGTGCTTGTGGTACAAACATGAGAAGAACTTGAGTTCAATCTACTTTTAAAAAGCTGGTTATGGTGCCAGGTTGGAGAACAAAAGTATCTATCTCCCTGGAGTTTGCTCCCTGGAGCCAGCATATCTGAATCCATGAGCTGCAAGTCAATGAGACACATTGTCTCAACAAGGTGGGTGGCTTCTGAGGAATAGTATTGAAGCTTGACTTCTGTCCTCCATATCCATGCTCAAAACCATGCACATCAATTAAATAATTGTAAGTATACACAACACCAAATAAATTAATAGTTTTGACAAGTCACTTAAAATTAAAAATATATATATCACTAATGACAGAGAAAAGAAAAACACAATAAATTATCTTATAATCTTATATAAGATAGAATTTCATTTTATATAGAGATGAAAACCTCAGCTCTTCTGTGTTCTTGTATATGCTATCTTATGTCAAGATGGTGCTAATCTTGACCTTGGTCCTTAGCTTTAGAAACTTAAAAACATTTATATAAATAAATGCAAAATGCACCATGACTGCCTGGAAGACATCCCCACCTTGAGGAGATGGAGCTGAGAAATGCTCTAATTCCAGCAGACACCCAGGGAGAGGCTCCATTCTTCGATCTTAGCTCCTTGCCTATTTTAGACAGCTTGCTATGTTAATCCTTGCCTTTGTGTGAGGCACATTGACCTCAAGACACAAGACCTGAGCTGTAGCCCTGACTCTTCCCCATGCCTGCCTATATTATCCACCACTTTAGGGTAAGAGGGTCACTCCCTTTATCCTTACTTAACTCCTCTCAGATTTTGAAGTGTGAGATGGAGTGATTACAAAGGTCTTTCCATGAATTTTTGCCCTTGAAGACAGCTCTTTGTGTGATCACAGCAAGCATCTCTTATCCTGCCGTCTCCCCTTCAACTCAGTTTCTCAGCCTCTGTCTCCCTGCATCCAG
Seq C2 exon
GCCCTGTGCAATGGTAGTTCCAGACTTTGAGCTGATCTGTGAGATTATGCTGGTAGCAGAAGGATTCATTGAAGCCCGATTGCTGGCCAGGAAGTTCATTACCCTTTACCGGCTGTGTAAAGAACTTCTCTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]