HsaINT0050064 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11738880-11742313:+
Coord C1 exon
chr17:11738880-11739037
Coord A exon
chr17:11739038-11742174
Coord C2 exon
chr17:11742175-11742313
Length
3137 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTGTCTTTCTATACTCAGGCC
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTAAAAAGCATTCAAGATGCGATTAGAGATAAGAAGCAGTGGTTCAGCTTCCTTGGGGAGGAGATCAGCCTGAATCCTTCTGTCGGTATCTTCATCACCATGAACCCAGGCTATGCTGGCCGCACAGAGCTGCCAGAGAATCTCAAGTCTCTCTTCAG
Seq A exon
GTGAGTGTCAGTTCTGCCCCATGCAAAAGCCCCAAAAGAGAAGTTTCTTTCATTTTTCCACTTAAAATGTGTGACATATATTTTAAAGAAAATTTGGAACATTTGGAAAAGTAGATTTGTAACAACCTTCTTTAATGTCTTTAATGCAGTAAAATTGCTTTTTGCTTAATTGTGTTCTGTTCTCCTCTGTATATACATTTTAAATCCATACGTTGGTAGCCTGCATTTGCGGTCTACATAGTTTCGTGTTGTTTTTATTTCGTAGTCTCTCATAATCATATCCTAAATATTTTCTTCTATTAGATATTCTTGATAAATCTCATTTCATGGCTGCATACTTTTTTATCAAGTGCATGGTTTACAATGTAATTAACTACTCCCCCATGGTTAAATATTAAGACTTTCTAACATTTAAAATAAATTTATGCATAATGCTGTAATGTACATCTTTGCATATAAATCTTTTTTTTCCGTATGTATGATTATTTTCCTTGGCTAGCTTCCCAGAAGTGGAATTACTGTGTTAATAGGTAGAAACATTTTTAAGGCTCTTGATACACATTGCCAAATTGCTTTCTAAAAAGAGTAGTACCAAATTACACTCCTCGTAGCGACGCATGAGAGCACCTCTTTTATTTCACCCTTGCTACCGGTGGACATTGCCATATTTTAAACTCTTCTTTATTTTGATAAGAAAACACAAATACATTTCATCGAAGTAGCTGGAGGCTGCATTCTTTTTCCAGAAAAGAAAAGTTGGCCCAACAAAGAGAAAACTGAAGAATGCTTCATGGCTTCTGATCTTCTGGTTACTGAACTTTTACCTAAGTGAGATAGACTGTGGGGTGCTATGACAAAACTGTTTTGTCTCATTTTTGGACTCATAAACACAGTGCTGTCTGTCCGGAGAGGTTGTCAACACTTTACTGGATTTCCAGAGGCATAGGAGATCGCTGGGCAGCTCCCTGAGTGCTTCACTCTCTCAGTCATGGCAAATTCCCGTGTCGCTGGGGTGACGGGGCCTTCTCCTTCTTCAGCCAGGTCCCTGTGTTAAGCAAGAGCTGCTGGAATGCCAACAAGCTGTCTAAACGGGTGCTACAGAAAACTGCATTGTTGACCATTTGTTTCTACAAAGTAATTATTAAATAAGCCTTGTGTTACAAATGATTATAGAAGTAGGTGATCACCCAGATAAGAATTCTTTCTTACCTTTTTTTCTTGCTGAATTTTTTTGCTGACTGGAATTGTCTTTGCCAGTTCAGGGTGCCATAATAAAAATACTGCAGACTGGGCGGCCTAAACAGCAGACATTTATTTCTCACAGTTCTAGAGACTGAAAGTTCAAAAGCAGGGTGCCAGCACGGTCAGGCTCTGGTGAGGGCTCTCCTCCAGGTTGCAGGCGGCCACCTTCTTGCTGTATCCTCACATGGAGGAAAGAGGATGAGCTAGCTCTCTGGGTAGCGCTCCACCCTCATGACCTAATGACCTTCCAAAGGCCCATCTCCAAATACCATCACATTGCATTTTGGGGGCACACAACATTTAGTCCATAACACATACCCATAGAAGGAAATTTGGAAATAAACATATTTTTCAAAATAGTAAGTACAAACATCTACTTTTACATTTAATTCTCTCAAAGGCCCTATGAGGTAGTACTAGTTTCTCCAGTGTTTAGTGAAGAAACAGATGCATTCAGCAAATTGCTCAGGGTAGTAACCCTAGTTACTAGGGTTAGCTAGTGAACCAACTAGTAAGCGGCAGAATGCTAGAGTTTGAACCCAGAGCCCCTATTCCTCCCCGCCCCCAGTCCTGTCATCCAGGAACAATCAGTGTAACCATTTGGCATTTTTTTTCCCAATACTGCAACAGTAGCGCATTTCTTTTTCAAAATTGGGATCAGACTATATATAGTTTAGTATCCTACTTTCATTAACTAATGTTTCTTTGTCATTATATAATTTACCTTTCACACCACTATTTTTCATGGCTGCATAGTGTTCTGTTGTACAAATGTATATTTACCCATATGTTCAGGTTGCAAAATAATTTTGAGAATTTAAGCAGCATTTGGTTGCTCCTTTGAATTTGAATACAATGTAAAATATTTCAAGAAAAAATGTGCTCGAATGAAATGTTTTTGAAAATTTCATATCAGTATAGGGAAAATGCAATTAAATAAATGTAACAACCTATTACATACCCAACAAATTAAAAAAATGTAAGTAATTTTAAAATCAGATGTTTTTAGTGCCAGAGGAAAAAAATACAACAAAGCCTTCTATAAATCCCTTTCTATATTATTGTATATGCCATTCTGTGTCAAGATAGGGTTAATAAGTATTAGGTTGGTGCAAACATAATTGCAGTTTTGCTATCGAAAGTAATGGCACAAACCGCAATTATTTTTGCACCATCTTAATACATATTTTAGACCTCATCATTAGAAATTTACATTTGTATTCAAACAAGTACAGGATACACCCTAGGTGTCTAGGCTTAGAGGAGACACACATTTGGAGAATGAAGAATAGGGGAACTCTCAGTTTCTTGAAAGTAATGGCAAAAACCACAGTTACTTTTGGACCCACTTAATACATACTTTAGGCCTCATCAAGAGAAATTTACATTTGTGTTCAAATAAGTACAGGATAAGCCCTGGGTGTTTAGGATTAGAGGAGACACACATTTTGAGGATGAAGAATAGGGGAACTCTCAGTTTGTTGTAGATACCCAGAGAAACTCAATTCCTTATTCTAAGCCTTGAATCTATTCTAGGCAATTTGCTTTACTAATTCATGCCTTGTGTAAGACACACTGAACTCAAGTCACAAGACTTGAGTGGTAGCTCCAAGTCTGCCCCTGCCTGCTAACATTATCCAGCCCCTTAAGAAGGCGACTTCATTTCCTTTATCCTTAGCTAACTCATCTCTAAGTTGAAAGTCTTCATGCTAACTGCAGCAGCACATAGAATAAATTGAAAGTCTTAGATGAAATAATGGCTCAGGTCTTTCCATGAGTTTTTGCACTCACAGATGCCTCCATGTGTGATCTCGGCCAGTGCTTATTTTCTTGCAGTCTCCTCTTCAACACTGTACTTGGGAAACTGACTGGGCCTTCTGTCTTTCTATACTCAG
Seq C2 exon
GCCTTGTGCAATGGTGGTTCCAGACTTTGAATTGATCTGTGAAATCATGCTGGTGGCAGAAGGATTCATTGAAGCCCAGTCATTAGCCAGAAAGTTCATCACTCTTTACCAGTTGTGCAAAGAGCTTCTCTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development