MmuINT0051759 @ mm9
Intron Retention
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32191704-32193414:-
Coord C1 exon
chr2:32193254-32193414
Coord A exon
chr2:32191847-32193253
Coord C2 exon
chr2:32191704-32191846
Length
1407 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCCTTACCCGCCACACCCAGCAA
3' ss Score
1.87
Exon sequences
Seq C1 exon
GTTACATCGGCGTGGTGAACCGGAGCCAGAAGGACATAGACGGCAAGAAGGACATCACAGCCGCCTTGGCTGCAGAGCGCAAATTCTTCCTCTCTCACCCATCCTACCGCCACTTGGCTGACCGCATGGGCACACCCTACCTGCAGAAGGTCCTCAATCAG
Seq A exon
GTAGGAGGGCAGGCCAGGCCAGGCCAGGGGCGGAGGGGGTGGGGTGGGGAGGGAAACAGGAATAATTTCAAGTACACCTTTGTTTGTTTGTTTATTTGTTTGCTTGTGTTTTGTTTTTTGAAGTTTTATTTTATTTTATATGTATAGCTATTTTGTCTGTGTCTGGTGCCCAAGGATGTCAGAAGAAAGTATTAGCTCCCCCTGGGACTGGAGTTACAGATGGTTGTGAGCTGTCGTGAGGTTGCTGGGAATCAAACCTGGGTCCTCTAGAAGAGCAGTCAATGCTCTTAATTGCAGAGCTCTCCAGCCCGGTTTCTTCAGTACATCTTATGGATGACCAAGATAGATTAGTATACAATGCAGAACCACCTAGATCCAGAGAAGGGAAGCCACTTGTCCCCGTTCCACAGGGAGGTAGTGACAAGGGCTTTGCTGACCTTTCCTGTCTGGGACATGGAAGGGGAGCCCCAGGACTCGCAGCATGTATGGAAGACTGGGATTTTGTGTGGATGGGGGCACTGACTAGAGGTGACGGGAATGCATTCATTCTGGACATCCTGGTCCTTTTGTCAGGACCCAGAGAGGCTGATCCAGAAACCACAAACATTCTAGAAGCTTCCCTGGGCTGTCCCCACTTCTGGAGTGTGTGTAGGGACAGTCAAGACTACCATAGAGCTGGTACCAGACCCCAGCTTCATTCTCACCTTCTGCGACACCACTCTATGAAAAAGAGGACAGTAATGACCAGACGCTGCTCCATAGTGTCCCCGCGATGGCTCATGGGGATAGGGTGTAGGCGAACGGAACAGGCTTGAGCACATGAACTTGAGAATTACCTTTCGGTAATTGGAGCCCAGAGGGTGCAAGGTGGGGTGTCCTTCAGCCTTCCCTGCCTAAAAACATTCGATTACTCAAAATAAGGTAGCTTTAAGTGTGGCTCCAGATTCCTGGCTCCTGTCAGAACCTGAGCTATGGCATATTGATTCGGAAAGCTCATCTCTGGGAGCGCCTGCAGAGCTCCCAGCTCGCCTGCTGTTGCAGAGGTTCTCAGTGTGTGGGTTGTAACCCCTTTGGGGGTTGAATGACCCATTCACAGGGGTTGCATGTCAAATATCCCGCATATCAGATATTTACATTACAGTTCATGGCAGTAGCAAAGTTACAGTTGTGAAGTAGCAACAAAAGTAATCTTATGGTTGGGATCGCCACCGTAGGAGGAACTGCATTAAAGGGCAGCGACAGGAAGGTTGAGAACCAGTGCTCTATAGCTTCTGGCTAGTCCTCCTCAGCTCCATGTCTCCCGTCATCCACACCGCCTCCTGGCCTCCCTCCGTCCCCATGCCCAGGCTCATGGGCACTTAGGCTTGTGACCTTGGTTTTAACCATTTCCTTACCCGCCACACCCAG
Seq C2 exon
CAATTGACCAACCACATCCGGGACACACTGCCGGGACTTCGGAACAAGCTGCAGAGCCAGCTGCTGTCCATTGAGAAGGAGGTGGACGAGTACAAGAACTTCCGACCGGATGACCCAGCGCGCAAGACCAAGGCCCTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-Dnm1:NM_010065:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(17.9=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACATCGGCGTGGTGAACC
R:
CAGCAGGGCCTTGGTCTTG
Band lengths:
302-1709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: