MmuINT0053303 @ mm9
Intron Retention
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20244336-20245371:-
Coord C1 exon
chr18:20245150-20245371
Coord A exon
chr18:20244382-20245149
Coord C2 exon
chr18:20244336-20244381
Length
768 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGTGCATTTTTTATATGTAGGAA
3' ss Score
8.38
Exon sequences
Seq C1 exon
GAAGCCAATATTAGACTCCCCACACAGACAGCCAACATCTGTGATACAAGCATGTCTGTTGGGACTCTTGGTGGTCAAGGAATCAAAACACAGCAAAGTTTTGAGATGGTCAAAGGAGGCCACACCTTGGAGTCCCACAAGGGAGGAGTGCTAGGAGCAGCAGAGCCTGGCCGATATGCTTACACAGACTGGCAAACTTTCACTCAACCTCGGCTTGGTGAA
Seq A exon
GTAAGTGCCCAGTCTTCAAGTGCCCACTCTGTGCAATGCTAACATGATTTATAAACCAGGGTTTCCCAAAGGTCCCCTTATACACCTGGATCGCATCTTTTCATCTCCTGTACAAGGATAGACACTGATGTAAGGAACACACTCAGAGTTTAATTAAGAAAATATAATTTGTGAGACTTTAGTACTAGTTTGTGTGTGCAATCTTTGAGATATCAAAAGACTGATATCTTTTTCACTAAACATTATCATAAAAACATCTTCAGTGAAGAATTAGCTATAGTATAATCAACAGACCATACATTGCCACTATTTTGCCAGTGTGCTGTAGTTCTATATGTAGTTATGATATCTTGCCTAGCTCAATCAACCAAGATTGGTAAACTTTAATCTTAGGTTCCACTCTACATGTTTTCCTTGATTGTTTCAGATTGCTCAGATGTGAGCCATATGTTAGATAATTACAGATATAGAACATGAATATATTACACATGTTATATATAACATTAATGTACTAGACCCTCATAACTATTTACAGTATAAATGTAAGAACCACAGTCTATACTGGTTCTCCCCCACATATACCAAGCAGCTGTTGAGATAAATTCCAACTAAAAACATCTTGTGTTCACGTGAAAAGTTGTAAGTTATTTATATGATCTATGCATAGCTTTAGTTTTTATAAATGTGTTCACTCTGAGCATTTATTTATTTGCTATATTTTAAGAATGAATATGATATAGACCAATCATGTGCATTTTTTATATGTAG
Seq C2 exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322-Dsc1:NM_013504:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.818
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=FE(42.9=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAATATTAGACTCCCCACAC
R:
TCAGAGTGTGTCCTCTAATGGA
Band lengths:
246-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: