MmuINT0053320 @ mm9
Intron Retention
Gene
ENSMUSG00000024331 | Dsc2
Description
desmocollin 2 [Source:MGI Symbol;Acc:MGI:103221]
Coordinates
chr18:20189299-20191036:-
Coord C1 exon
chr18:20190991-20191036
Coord A exon
chr18:20190905-20190990
Coord C2 exon
chr18:20189299-20190904
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTGTGCTTTCTCCCCACCAGAAG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GAAACCATTAGAGGACACACTCTGATTAAAAATTAAACAATAAAAG
Seq A exon
GTAAATCAAAGCAATTCTTTTTCTGTTAGTACACTTTGGTGCTTAAAATAATAAAAATAAAATATTTTGTGCTTTCTCCCCACCAG
Seq C2 exon
AAGGTACAGTTTTGCCATACGGATGACAACCAGAAGCTTGCTCAAGACTACGTCCTCACATACAACTATGAGGGAAAAGGCTCGGCTGCTGGCTCTGTGGGTTGCTGTAGTGACCTACAGGAAGAAGACGGGCTTGAGTTTTTGGACCATCTGGAGCCCAAATTTAGGACATTGGCAGAAGTATGTGCAAAGAGGTGAACGACTTCTAATAGGAAAACGAAAACTAATGGATTCACTGCCTTGCCCTCCCTGCTTTTCACTGTAAACCAGGAGTTTTCAAAAAACAGAAGATGTTATATTTGGGGCTCCCTCTCCTATCTCGGTCTGCAGAATCTCCATGCAAATGCACATTTACAGAGAAACTTTGCAATTAGTACTTGAAAACCATTATGCATGGATTTCAATTACTTCTTTTTTACCAGATGACATCTTAGGTGGAAACTTAAGGAAATTTGCATTACTGTTTACATTGGGTATAATGACAGCAGCCAACTTATAGTGCAATAAAGTTGAATGGATTTGAGTCTATTATAGACTATTGACTATAACCCAATTGGAGACTGTAGACACCATTATCTCCAGTTAATGGATTAACTGGTTGTTCATACGGTGCTTGGAAACAGTTGTTTTCCTAAACATTCTAAACTGTATATGCTGTGCCTTGCTTTAGTTATATTCTTGTAATATGGCCTGGCTTCATAGTACAAAGGTAGATTGCCAGGCAGCCTTTGAGTGTGCTTGAAATTCCAATCCAGTGGGTGTTAGCTTCTGTTCTGTGTAAAATCCTGCCCTGAATCACAATCTCTTTTGTACCAACTTTGTCAGTTAAATTTAGTTTTCAAAACTTCTTTATAATGTGTTCTGTTTTTCTAAAAGTTTTGTCTGTGAACACCAAATGCTCTAAACTCCCATCTTCTCTATTTTTAATTTTTTTTTCATTTTCTCTCCTGTTTGACTTTGCAAGGTCTGCTTCCAAGATATTCCTAAAACTTATCTTTTCTCATAAAATAGTTGGTGTGTATGCATATCATTGTTGGTTTTCTTAAGCTCAATATAATAGCAACATTATTGTTTTGGATTTTTTGGTAATTATTGCTTCATTTTTGTCCTTAGTAAAGAACTTTTAATTTTCCCAGTGAAACTATGGGACTCTTTCATAATCTTTTTGAAGCAATGTTCTTCGTGACAGAAGCAATAGTGTATTTAGAAGTAGGTTGTGGCAATCTAATATAGAATAGCATAGTTACAATTTCCATCTTTAATTCAGGGACCCTGGAAGTGGGAAGTAGTGATAGAGTTTAGACTAAGCATCTCAGCATAATAATCTCAAACAATCTCTAGGATAATGCCTTCTCCAGTGTTTTAGATGATATGGCTAGTTATAATTGCATTGTTGTAAAATTAGTTTTAGAAGCAGTTTGTAATTATAGTTATTTTATGAAATATAGGAAATGGGCCAAGCAATTTAAAATTTTTTAGAAATTTACACACAAGTAAACTTCATACCACAGGACACACTCCCTTCAATCAGTGAGCTCAGCACTTAACCTAGATGGATGGATATTCTAGGTTGGATAATTGGTGCAATATAGATATGTGTGATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024331-Dsc2:NM_013505:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104912=Cadherin_C=PD(52.5=97.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTAGAGGACACACTCTGA
R:
ACTCAAGCCCGTCTTCTTCCT
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: