MmuINT0053602 @ mm9
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34306324-34307539:+
Coord C1 exon
chr1:34306324-34306483
Coord A exon
chr1:34306484-34307454
Coord C2 exon
chr1:34307455-34307539
Length
971 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATGGTACCTGTGCTTTTAGGCT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GAACCGTCAACTGGAAGGGATCTCGGTGGTAGCTCAGGAGTTTCATGAGACCCTGGAGCCACTGAACGAGTGGCTCACAGCTGTAGAAAAGAAGCTGGCAAACTCGGAGCCCATAGGAACCCAGGCACCAAAGCTGGAGGAGCAGATTTCACAGCACAAG
Seq A exon
GTAAGAAGTGTCGCGTGCCGGTGGCTTGTGTTTGTTAGATTATGCATAATTGTGAAACTAAATTCATTTTAAAGATCATCCTTTGGTTCTGTTTACGTTCTTCATTTGTCCACCCCTTTCAGTTTTGTTCTGTTTCGTTGTCTTCCTTTTTTGAACTTTGTTTAGGTCTTAGAAGATGACATCACCAATCACAGCAAACAGTTACACCAGGCCGTTAGCATTGGCCAGTCCTTAAAGGTCCTCAGCTCCAGGGAGGACAAGGATTTGGTGCAGAGTAAGCTAGACTCCTTGCAAGTGTGGTACTTTGAGATTCAAGAGAAAAGTCACAGCAGGTCTGAGCTCCTCCAGCAGGCCCTGTGCAATGCTAAGATTTTTGGGGAAGATGAAGTTGAGCTGATGAACTGGCTGAATGAAGTACATGGCAAACTGAGCAAGCTGTCAGTCCAGGATCACAGCCCAGAGGCACTGTGGAGACAGCGGGCTGAACTCAGGGTACCTTCATTTATTTCTTTTCTTTTGTTTCTTTCTTTCTTTTTTTCTCATTTCAGTTGTTATTCATTTTATCCATTATTATTGGTTATATATTATTTCGTGTCCATTATGATTTGTGTGATTCATTGAACTCACAATAGACTTTTTCTCGTGTGTACATACCTTTAATGACATGAGATTTAACTTATCCAGTTAGCTAGCTTTCTCGCTACTTATTCAGTGTGATTATTCTTGTATTCAACGACCCCATAAGGAACCAATACCTCCACAAAGGCAGTTTTATAAGCCCCACTGTGTGTTCTAAAAGAGAAGTGCCATGCATACTGGAAGACGAGCACAGGGAGGACCTGGGTGGAGCGAGGGAGGGGTAACGGACATTTAAAAATGCAGTGTAGTGTCTCTGCAGATCATTAAACCTTCTCTGAGGTTAACAAGTGCTCTCTCCCCTGCCTCCCCACAAATGGTACCTGTGCTTTTAG
Seq C2 exon
GCTCTACAAGAAGACATTCTCCTCCGGAAACAGAGTGTAGATCAGGCACTGCTGAACGGCTTAGAGCTGCTCAAACAGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-Dst:NM_133833:56
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
NA
C2:
PF0043516=Spectrin=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAACTGGAAGGGATCTCG
R:
TGGTCTGTTTGAGCAGCTCTA
Band lengths:
238-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: