BtaINT0053035 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3612070-3613143:+
Coord C1 exon
chr23:3612070-3612396
Coord A exon
chr23:3612397-3613058
Coord C2 exon
chr23:3613059-3613143
Length
662 bp
Sequences
Splice sites
5' ss Seq
CGGGTATTT
5' ss Score
4.84
3' ss Seq
AGATGGTACCTGTATTTTAGGTT
3' ss Score
7.23
Exon sequences
Seq C1 exon
GCGTTAGAAGATGACATCCTGCATCACAATAAGCATTTACACCAGACTGTTAGCATTGGCCAGTCTTTAAAGGTTTTGAGCTCCAGGGAGGATAAAGATATGGTGCAGAGTAAACTAGACTCCTCCCAAGTGTGGTACATTGAGATTCAAGAGAAAAGCCACAGCAGGTCTGAGCTCCTGCAGCAGGCTCTGTGTAATGCTAAGATTTTTGGGGAAGATGAAGTGGAGCTGATGAACTGGCTGAGTGAAGTGCATGACAAGCTGAGGCGGCTCTCGGTCCAGGACTCCAGCCCCGAGGGGCTGTGGACACAGCAGGCTGAGTTGCGG
Seq A exon
GTATTTTGATTTATTTTACTTTTTCATTTCAGTTGACCTTATTTTCTCAGTTCTCTTTATTTCTGTATTATTTTACGTTCGCTATGATTTAGGTTAATTCCTGTACTCAAAAAAGACATTGCCTTTGTATACAATGACCTTTTTTTAAATTGAAGTTTAGTTGATTTACAGTGTGGTGTTAGTTTTACGTGTACAGTAAACCAATTCAGTTATATATATATGTATATATATACTTTTTCAGATTCTTTTCCCATCTAGATTATTATACAATATTGAGTATCGTTCCCTGTGCTATACAGTAGGTCCTTGTTGTTTATCCATTTTAAATATAGAGTGTTAGATTCAATTAAATCACATCTAATGTAAGAAGAGATTCAGTTTATCCAGTAATAGATTGCTCATTTTTCATTTTATTATTTCATCATTGTATACAAAGGCCCACAATTAACCAATACTCCAGTCTCTCCACGTAGCTCATTTTCTGAGTAGGGGAGAGAATTTCGATAGTTGAACTGAGACATGGGCACAGTGCTGAAACAAGGAGAAGTAAATGTGAGAACAGTGAGGAATATTTGAAAATGGGAGGTGTTTACTCAAAAAAATGAAACCTAGTTGACATTCTCTTAAGATTAGCTGATAACAAGATGGTACCTGTATTTTAG
Seq C2 exon
GTTCTTCAAGAGGACATCCAGCTTAGAAAACAAAATGTAGACCAGGCTCTGCTGAATGGCCTGGAACTACTTAAACGAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(38.2=35.8)
A:
NA
C2:
PF0043516=Spectrin=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACTGTTAGCATTGGCC
R:
TTCAGCAGAGCCTGGTCTACA
Band lengths:
343-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]