GgaINT0079328 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89875113-89875691:+
Coord C1 exon
chr3:89875113-89875439
Coord A exon
chr3:89875440-89875606
Coord C2 exon
chr3:89875607-89875691
Length
167 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTT
5' ss Score
3.5
3' ss Seq
CCAGTGGCATTTTCTCTTAGGAG
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCCCTAGAAGATGATGTCCTAGCTCACAATAAGAGTTTGCTTCAGGCCATTAGCATTGGTCAGTCTCTAAAGACTATGAGCTCCAGGGAAGATAAAGATATGGTGCAGGAAAAGCTAGATTCTTCTCAGGCCCGATACATTGAGATTCAAGAGAAGAGCAACAGCAGGTCTGAACTTCTACAGCAAGCGTACTGCAATGCTCAGATTTTTGGGGAGGACGAAGTTGAGTTGATGAACTGGCTGAATGAAGTCCATGATAAACTGAGCAAGTTGTCAGTCCAAGATTGCAACACAGAATTGCTTGAGAAACAGCACTCTGAACTACTG
Seq A exon
GTATTTTTATTTCTGTTCATTTATTATTTATTTTCATATGATTTATAATCCATATTTCATTTATTTTTCATTAATTTAATTTTGTTTTAAATGGAAATATGCTTACTCCAAATGAAAATAGTATTGTGTATTATGTCTACGCTTACACCAGTGGCATTTTCTCTTAG
Seq C2 exon
GAGCTTCAGGAGGAGATTCTTCTCAGAAAACAAAATGTCGATTTGGCTATACAAAATGGCTTAGAGCTTCTCAAACAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.5=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACAGCAGGTCTGAACT
R:
TGTTTGAGAAGCTCTAAGCCA
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]